RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 PAPD7Q5XG87 772 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 DEFB107AQ8IZN7 70 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 LSM14AQ8ND56 463 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 DENND6BQ8NEG7 585 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 OR6Y1Q8NGX8 325 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 S100PBPQ96BU1 408 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 CAMSAP3Q9P1Y5 1249 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 SLC39A10Q9ULF5 831 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 FESP07332 822 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 PRMT2P55345 433 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 ARF3P61204 181 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 ARF1P84077 181 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 DLG1Q12959 904 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 DCAF4L1Q3SXM0 396 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 CHCHD4Q8N4Q1 142 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 VPS37AQ8NEZ2 397 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 KBTBD8Q8NFY9 601 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 DQX1Q8TE96 717 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 C9orf16Q9BUW7 83 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 MRPL4Q9BYD3 311 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 RGS18Q9NS28 235 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 DCCP43146 1447 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 SRRM3A6NNA2 597 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 E9PBE3 544 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 AMHP03971 560 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 RRM2P31350 389 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 CAPZA2P47755 286 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 ANTXR2P58335 489 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 CACNB2Q08289 660 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 STX4Q12846 297 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 EDRF1Q3B7T1 1238 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 DDI2Q5TDH0 399 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 SCARA3Q6AZY7 606 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 CDC73Q6P1J9 531 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 KCNK18Q7Z418 384 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 GALNT15Q8N3T1 639 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 SH3TC2Q8TF17 1288 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 KRT35Q92764 455 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 PRRG3Q9BZD7 231 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 ZNF609O15014 1411 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 PEAK1Q9H792 1746 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 TRIM64A6NGJ6 449 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 TRIM64BA6NI03 449 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 DHFRP00374 187 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 LRG1P02750 347 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 RARGP13631 454 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 AQP5P55064 265 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 TPI1P60174 286 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 SNRNP35Q16560 246 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 AAK1Q2M2I8 961 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 VPS33AQ96AX1 596 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 MRPL48Q96GC5 212 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 SPATA33Q96N06 139 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 DNAJC7Q99615 494 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 EPB41L1Q9H4G0 881 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 TMEM138Q9NPI0 162 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 PAK5Q9P286 719 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 ZNF112Q9UJU3 913 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 TMCC3Q9ULS5 477 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 COQ6Q9Y2Z9 468 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 RRN3P2A6NIE6 340 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 ZNF879B4DU55 563 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 H7C2Y5 167 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 TFECO14948 347 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 MDM4O15151 490 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 ATG7O95352 703 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 LDLRP01130 860 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 FEN1P39748 380 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 HSD17B4P51659 736 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 DGCR6Q14129 220 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 PIGHQ14442 188 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 EPHA7Q15375 998 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 TCHHL1Q5QJ38 904 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 PMF1Q6P1K2 205 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 ULK3Q6PHR2 472 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 ISLR2Q6UXK2 745 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 PHC2Q8IXK0 858 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 HDAC7Q8WUI4 952 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 ANKRD49Q8WVL7 239 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 ZNF669Q96BR6 464 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 CDC42EP4Q9H3Q1 356 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 A1CFQ9NQ94 594 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 ZNF302Q9NR11 478 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 RAPGEFL1Q9UHV5 662 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 CPDO75976 1380 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 C1orf167Q5SNV9 1468 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 ADGRA2Q96PE1 1338 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 KLHL33A6NCF5 533 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 TTLL13PA6NNM8 815 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 SCGNO76038 276 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 MAP3K6O95382 1288 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 MSH3P20585 1137 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 POU1F1P28069 291 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 MCCD1P59942 119 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 COPZ1P61923 177 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 S100A12P80511 92 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 SMCO1Q147U7 214 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 OTUD3Q5T2D3 398 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 BROXQ5VW32 411 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 MZT2AQ6P582 158 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms