RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 KLC2Q9H0B6 622 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 CPA4Q9UI42 421 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 A0A1B0GVG6 124 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 PRR5-ARHGAP8B1AHC4 643 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 DPYSL4O14531 572 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 STAU1O95793 577 aaKnown RBP17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 C1QAP02745 245 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 ARHGAP8P85298 464 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 OLIG2Q13516 323 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 HSF5Q4G112 596 aaPredicted RBP17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 ADAM32Q8TC27 787 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 CSPG4P5Q96PW8 444 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 SPATS2LQ9NUQ6 558 aaKnown RBP17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 STOML1Q9UBI4 398 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 MRPL42Q9Y6G3 142 aaKnown RBP17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 IQANK1A0A1B0GTG1 560 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 DARSP14868 501 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 TGM2P21980 687 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 KCNA4P22459 653 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 VHLP40337 213 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 GTF2A2P52657 109 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 ADIGQ0VDE8 80 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 VWA5B1Q5TIE3 1220 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 UNC5AQ6ZN44 842 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 ZNF534Q76KX8 674 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 OSTM1Q86WC4 334 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 SPNS2Q8IVW8 549 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 SNX25Q9H3E2 840 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 ABHD16BQ9H3Z7 469 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 FLRT1Q9NZU1 646 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 SEPT10Q9P0V9 454 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 CCDC78A2IDD5 438 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 SLC15A5A6NIM6 579 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 VAV1P15498 845 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 BST2Q10589 180 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 CCL14Q16627 93 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 DCAF6Q58WW2 860 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 DEFB106AQ8N104 65 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 NDUFAF2Q8N183 169 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 ZC3H15Q8WU90 426 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 DTLQ9NZJ0 730 aa17.04■□□□□ 0.32
CCDC88B-210ENST00000494566 AFF1P51825 1210 aaKnown RBP17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 SLC18A1P54219 525 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 RPL10AP62906 217 aaKnown RBP17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 NME3Q13232 169 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 GRB14Q14449 540 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 PRKD1Q15139 912 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 STILQ15468 1287 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 WASHC2DQ5SRD0 308 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 OLFML2BQ68BL8 750 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 RGS9BPQ6ZS82 235 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 NUDCD3Q8IVD9 361 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 GSTCDQ8NEC7 633 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 ZNF670Q9BS34 389 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 TIMM13Q9Y5L4 95 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 LAMA3Q16787 3333 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 MDM4O15151 490 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 STRNO43815 780 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 CREB3O43889 395 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 WFS1O76024 890 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 RALGPS1Q5JS13 557 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 C1orf146Q5VVC0 180 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 NCBP2-AS2Q69YL0 99 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 ALKAL1Q6UXT8 129 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 IZUMO2Q6UXV1 221 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 PIGZQ86VD9 579 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 NT5DC4Q86YG4 428 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 ANKRD52Q8NB46 1076 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 APOPT1Q96IL0 206 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 PLEKHA5Q9HAU0 1116 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 PPM1HQ9ULR3 514 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 BCLAF3A2AJT9 711 aaKnown RBP17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 I3L4J1 428 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 PPP1R12AO14974 1030 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 MSX2P35548 267 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 SULT1E1P49888 294 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 SNX17Q15036 470 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 FOXB2Q5VYV0 432 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 RIPOR1Q6ZS17 1223 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 SH2D5Q6ZV89 423 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 PLEKHH3Q7Z736 793 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 SKA1Q96BD8 255 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 PPCSQ9HAB8 311 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 ARHGEF4Q9NR80 690 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 CNTN3Q9P232 1028 aa17.03■□□□□ 0.32
CCDC88B-210ENST00000494566 MFSD11O43934 449 aa17.02■□□□□ 0.32
CCDC88B-210ENST00000494566 MYL3P08590 195 aa17.02■□□□□ 0.32
CCDC88B-210ENST00000494566 ETV4P43268 484 aa17.02■□□□□ 0.32
CCDC88B-210ENST00000494566 CACNA2D1P54289 1103 aa17.02■□□□□ 0.32
CCDC88B-210ENST00000494566 BCAT1P54687 386 aa17.02■□□□□ 0.32
CCDC88B-210ENST00000494566 MRPS5P82675 430 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-210ENST00000494566 HFE2Q6ZVN8 426 aa17.02■□□□□ 0.32
CCDC88B-210ENST00000494566 SLC26A11Q86WA9 606 aa17.02■□□□□ 0.32
CCDC88B-210ENST00000494566 LRRC52Q8N7C0 313 aa17.02■□□□□ 0.32
CCDC88B-210ENST00000494566 APPL2Q8NEU8 664 aa17.02■□□□□ 0.32
CCDC88B-210ENST00000494566 SH3TC2Q8TF17 1288 aa17.02■□□□□ 0.32
CCDC88B-210ENST00000494566 FBXO41Q8TF61 875 aa17.02■□□□□ 0.32
CCDC88B-210ENST00000494566 KRT82Q9NSB4 513 aa17.02■□□□□ 0.32
CCDC88B-210ENST00000494566 FETUBQ9UGM5 382 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms