RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 LRRC38Q5VT99 294 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 LRRC74BQ6ZQY2 392 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 PRRT2Q7Z6L0 340 aaPredicted RBP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 LCA5Q86VQ0 697 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 CD99L2Q8TCZ2 262 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 FTHL17Q9BXU8 183 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 PCYOX1Q9UHG3 505 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 ST3GAL5Q9UNP4 418 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 RPL26L1Q9UNX3 145 aaKnown RBP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 PCDHA2Q9Y5H9 948 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 XYLBO75191 536 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 FKBP6O75344 327 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 LCA5LO95447 670 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 AKT1P31749 480 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 EFTUD2Q15029 972 aaKnown RBP eCLIP11.31□□□□□ -0.64e-7■■■■■ 27.2
HDAC6-228ENST00000486227 NPNTQ6UXI9 565 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 ZNF572Q7Z3I7 529 aaPredicted RBP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 TFAP2DQ7Z6R9 452 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 PRPF39Q86UA1 669 aaKnown RBP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 SCUBE1Q8IWY4 988 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 CCDC138Q96M89 665 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 RBM22Q9NW64 420 aaKnown RBP eCLIP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 GPR25O00155 361 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 ZNF197O14709 1029 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 MMP3P08254 477 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 CCNHP51946 323 aaPredicted RBP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 BTBD10Q9BSF8 475 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 GPR63Q9BZJ6 419 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 POPDC2Q9HBU9 364 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 CFAP99D6REC4 459 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 FANCGO15287 622 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 TMCC1O94876 653 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 KRT16P08779 473 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 PYGBP11216 843 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 JAM2P57087 298 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 PLD1Q13393 1074 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 NOL9Q5SY16 702 aaKnown RBP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 TSHZ1Q6ZSZ6 1077 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 SLAIN1Q8ND83 568 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 C18orf25Q96B23 403 aaPredicted RBP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 MAML3Q96JK9 1138 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 NTPCRQ9BSD7 190 aaKnown RBP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 CINPQ9BW66 212 aaPredicted RBP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 TBC1D23Q9NUY8 699 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 DOT1LQ8TEK3 1739 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 ENDOD1O94919 500 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 YBX3P16989 372 aaKnown RBP eCLIP11.3□□□□□ -0.69e-6■■■□□ 18.1
HDAC6-228ENST00000486227 TPH1P17752 444 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 MMP8P22894 467 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 PSMD7P51665 324 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 CRYBB1P53674 252 aaPredicted RBP11.3□□□□□ -0.6
HDAC6-228ENST00000486227 MMRN1Q13201 1228 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 CYTH1Q15438 398 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 SLC39A12Q504Y0 691 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 TMEM86AQ8N2M4 240 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 B3GALNT2Q8NCR0 500 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 JOSD2Q8TAC2 188 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 CMTM5Q96DZ9 223 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 HSFY1Q96LI6 401 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 FICDQ9BVA6 458 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 SLC7A5P2Q9GIP4 190 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 ELOVL4Q9GZR5 314 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 CCDC134Q9H6E4 229 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 NT5MQ9NPB1 228 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 IARS2Q9NSE4 1012 aaKnown RBP11.3□□□□□ -0.6
HDAC6-228ENST00000486227 RRN3Q9NYV6 651 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 RNF103O00237 685 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 FSCN2O14926 492 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 TOMM70O94826 608 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 CD52P31358 61 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 HADHAP40939 763 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 HIRAP54198 1017 aaPredicted RBP11.3□□□□□ -0.6
HDAC6-228ENST00000486227 OCA2Q04671 838 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 DPYSL3Q14195 570 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 POLD3Q15054 466 aaPredicted RBP11.3□□□□□ -0.6
HDAC6-228ENST00000486227 DDI1Q8WTU0 396 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 THAP11Q96EK4 314 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 ZNF558Q96NG5 402 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 SNRNP25Q9BV90 132 aaKnown RBP11.3□□□□□ -0.6
HDAC6-228ENST00000486227 TRIM15Q9C019 465 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 LRRC19Q9H756 370 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 LATS2Q9NRM7 1088 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 ZNF212Q9UDV6 495 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 TRPM3Q9HCF6 1732 aaPredicted RBP11.3□□□□□ -0.6
HDAC6-228ENST00000486227 LOC100653049A0A140TA62 436 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 NCAM2O15394 837 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 CA12O43570 354 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 KRT34O76011 436 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 NPR3P17342 541 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 NOS2P35228 1153 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 TUFMP49411 452 aaKnown RBP11.3□□□□□ -0.6
HDAC6-228ENST00000486227 PRMT2P55345 433 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 BLMHQ13867 455 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 PTPN20Q4JDL3 420 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 PPP1R26Q5T8A7 1209 aaPredicted RBP11.3□□□□□ -0.6
HDAC6-228ENST00000486227 DUPD1Q68J44 220 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 STRA8Q7Z7C7 330 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 ANKRD52Q8NB46 1076 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 WNT8BQ93098 351 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 ZNF184Q99676 751 aaPredicted RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms