RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 KIAA1755Q5JYT7 1200 aa3.87□□□□□ -1.79
CCDC88A-212ENST00000474059 UNC13DQ70J99 1090 aa3.87□□□□□ -1.79
CCDC88A-212ENST00000474059 FSTL5Q8N475 847 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-212ENST00000474059 LPAR1Q92633 364 aa3.87□□□□□ -1.79
CCDC88A-212ENST00000474059 IL21RQ9HBE5 538 aa3.87□□□□□ -1.79
CCDC88A-212ENST00000474059 METTL14Q9HCE5 456 aaKnown RBP3.87□□□□□ -1.79
CCDC88A-212ENST00000474059 KLHL42Q9P2K6 505 aa3.87□□□□□ -1.79
CCDC88A-212ENST00000474059 MYO6Q9UM54 1294 aa3.87□□□□□ -1.79
CCDC88A-212ENST00000474059 G3BP2Q9UN86 482 aaKnown RBP3.87□□□□□ -1.79
CCDC88A-212ENST00000474059 MDM4O15151 490 aa3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 LINC01565O15544 149 aa3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 MARCH6O60337 910 aa3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 ALDH1L1O75891 902 aa3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 CT47B1P0C2W7 299 aaPredicted RBP3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 RFPL3SP0C7P2 107 aa3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 YY1P25490 414 aa3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 COMPP49747 757 aaPredicted RBP3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 ERVFC1-1P60608 527 aa3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 ODR4Q5SWX8 454 aa3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 CTU1Q7Z7A3 348 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 MORC1Q86VD1 984 aa3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 UEVLDQ8IX04 471 aa3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 ASB12Q8WXK4 309 aa3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 PLK2Q9NYY3 685 aa3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 KCNG2Q9UJ96 466 aa3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 THRAP3Q9Y2W1 955 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 SCN5AQ14524 2016 aa3.86□□□□□ -1.79
CCDC88A-212ENST00000474059 SRRM3A6NNA2 597 aaPredicted RBP3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 BECN2A8MW95 431 aa3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 M0QZQ0 153 aa3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 HOXC6P09630 235 aa3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 CARSP49589 748 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 ABATP80404 500 aa3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 CRYZQ08257 329 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 TRAF1Q13077 416 aa3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 TTF1Q15361 905 aaPredicted RBP3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 MZT2AQ6P582 158 aa3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 FAM83HQ6ZRV2 1179 aaPredicted RBP3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 ARMC9Q7Z3E5 817 aa3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 FOXP4Q8IVH2 680 aaPredicted RBP3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 YAF2Q8IY57 180 aa3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 RAVER1Q8IY67 606 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 LAS2Q8IYD9 372 aa3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 EXD3Q8N9H8 876 aa3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 JDP2Q8WYK2 163 aa3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 LAMP3Q9UQV4 416 aa3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 EMSYQ7Z589 1322 aa3.85□□□□□ -1.79
CCDC88A-212ENST00000474059 CFAP69A5D8W1 941 aa3.84□□□□□ -1.79
CCDC88A-212ENST00000474059 LCATP04180 440 aa3.84□□□□□ -1.79
CCDC88A-212ENST00000474059 UMODP07911 640 aa3.84□□□□□ -1.79
CCDC88A-212ENST00000474059 ZKSCAN1P17029 563 aaPredicted RBP3.84□□□□□ -1.79
CCDC88A-212ENST00000474059 TCEA1P23193 301 aaKnown RBP3.84□□□□□ -1.79
CCDC88A-212ENST00000474059 AGTR2P50052 363 aa3.84□□□□□ -1.79
CCDC88A-212ENST00000474059 SHBQ15464 509 aa3.84□□□□□ -1.79
CCDC88A-212ENST00000474059 C9orf57Q5W0N0 161 aa3.84□□□□□ -1.79
CCDC88A-212ENST00000474059 ABLIM2Q6H8Q1 611 aa3.84□□□□□ -1.79
CCDC88A-212ENST00000474059 ISM2Q6H9L7 571 aa3.84□□□□□ -1.79
CCDC88A-212ENST00000474059 DHRS13Q6UX07 377 aa3.84□□□□□ -1.79
CCDC88A-212ENST00000474059 C7orf57Q8NEG2 295 aa3.84□□□□□ -1.79
CCDC88A-212ENST00000474059 PLAC1Q9HBJ0 212 aa3.84□□□□□ -1.79
CCDC88A-212ENST00000474059 ZNF180Q9UJW8 692 aa3.84□□□□□ -1.79
CCDC88A-212ENST00000474059 ICAM5Q9UMF0 924 aa3.84□□□□□ -1.79
CCDC88A-212ENST00000474059 PCDHGB1Q9Y5G3 927 aa3.84□□□□□ -1.79
CCDC88A-212ENST00000474059 A0A1B0GVT2 93 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 SMTNL1A8MU46 457 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 RGS14O43566 566 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 PARNO95453 639 aaKnown RBP3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 SGPL1O95470 568 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 IGHMBP2P38935 993 aaKnown RBP3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 RAB27AP51159 221 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 DGKQP52824 942 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 GAD2Q05329 585 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 KIF5AQ12840 1032 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 GPS2Q13227 327 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 WASHC2DQ5SRD0 308 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 PRAMEF19Q5SWL8 479 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 LIPMQ5VYY2 423 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 HIST2H2BCQ6DN03 193 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 C16orf82Q7Z2V1 217 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 KAT2AQ92830 837 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 MSLNLQ96KJ4 702 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 CDH19Q9H159 772 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 SLC25A32Q9H2D1 315 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 CDCP1Q9H5V8 836 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 C6orf106Q9H6K1 298 aaPredicted RBP3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 RXFP3Q9NSD7 469 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 ITGB1BP2Q9UKP3 347 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 KIF26BQ2KJY2 2108 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 DOCK7Q96N67 2140 aa3.83□□□□□ -1.8
CCDC88A-212ENST00000474059 SERINC4A6NH21 518 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 F8W8V4 182 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 PRPF3O43395 683 aaKnown RBP3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 MAP4K4O95819 1239 aaPredicted RBP3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 MT-ND5P03915 603 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 ENO1P06733 434 aaKnown RBP3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 AKR1A1P14550 325 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 PKMP14618 531 aaKnown RBP3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 MATN1P21941 496 aa3.82□□□□□ -1.8
CCDC88A-212ENST00000474059 PCYT1AP49585 367 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms