RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 SLC11A2P49281 568 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 PGFP49763 221 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 TBX4P57082 545 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 PRKCQQ04759 706 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 PPP2R5DQ14738 602 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 SPA17Q15506 151 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 BRMS1LQ5PSV4 323 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 CCDC122Q5T0U0 273 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 DCUN1D2Q6PH85 259 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 H2AFVQ71UI9 128 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 STRADAQ7RTN6 431 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 TAC4Q86UU9 113 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 ZNF557Q8N988 423 aaPredicted RBP9.06□□□□□ -0.96
COL28A1-205ENST00000453441 CTNNBL1Q8WYA6 563 aaPredicted RBP9.06□□□□□ -0.96
COL28A1-205ENST00000453441 NDRG1Q92597 394 aaKnown RBP9.06□□□□□ -0.96
COL28A1-205ENST00000453441 ZNF653Q96CK0 615 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 RSPRY1Q96DX4 576 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 SHDQ96IW2 340 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 CALR3Q96L12 384 aaKnown RBP9.06□□□□□ -0.96
COL28A1-205ENST00000453441 NPY6RQ99463 290 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 BAG1Q99933 345 aaPredicted RBP9.06□□□□□ -0.96
COL28A1-205ENST00000453441 FAM83CQ9BQN1 747 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 SMG9Q9H0W8 520 aaKnown RBP9.06□□□□□ -0.96
COL28A1-205ENST00000453441 C8orf33Q9H7E9 229 aaPredicted RBP9.06□□□□□ -0.96
COL28A1-205ENST00000453441 METTL5Q9NRN9 209 aaKnown RBP9.06□□□□□ -0.96
COL28A1-205ENST00000453441 DUS2Q9NX74 493 aaKnown RBP9.06□□□□□ -0.96
COL28A1-205ENST00000453441 SMPD4Q9NXE4 827 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 UVRAGQ9P2Y5 699 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 CNOT8Q9UFF9 292 aaKnown RBP9.06□□□□□ -0.96
COL28A1-205ENST00000453441 STOML2Q9UJZ1 356 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 NAALADL1Q9UQQ1 740 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 CCL26Q9Y258 94 aa9.06□□□□□ -0.96
COL28A1-205ENST00000453441 C2CD4BA6NLJ0 364 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 TMCO5BA8MYB1 307 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 EIF3CLB5ME19 914 aaKnown RBP9.05□□□□□ -0.96
COL28A1-205ENST00000453441 ARNTLO00327 626 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 MAN2B1O00754 1011 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 ENDOD1O94919 500 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 TMEM253P0C7T8 217 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 BMP2P12643 396 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 PDGFRAP16234 1089 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 GPD1P21695 349 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 CCR1P32246 355 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 RDXP35241 583 aaKnown RBP9.05□□□□□ -0.96
COL28A1-205ENST00000453441 SULT1E1P49888 294 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 ZNF143P52747 638 aaPredicted RBP9.05□□□□□ -0.96
COL28A1-205ENST00000453441 AIF1P55008 147 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 GPC5P78333 572 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 ZXDAP98168 799 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 GFPT1Q06210 699 aaPredicted RBP9.05□□□□□ -0.96
COL28A1-205ENST00000453441 MAMLD1Q13495 774 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 EIF4EBP2Q13542 120 aaPredicted RBP9.05□□□□□ -0.96
COL28A1-205ENST00000453441 GRM2Q14416 872 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 ACAP1Q15027 740 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 TAF5Q15542 800 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 ITPRIPL2Q3MIP1 535 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 PREPLQ4J6C6 727 aaPredicted RBP9.05□□□□□ -0.96
COL28A1-205ENST00000453441 SYPL2Q5VXT5 272 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 SUGP1Q8IWZ8 645 aaKnown RBP9.05□□□□□ -0.96
COL28A1-205ENST00000453441 RHOT2Q8IXI1 618 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 FAM217AQ8IXS0 508 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 CPXM2Q8N436 756 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 ATP6V0D2Q8N8Y2 350 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 SPC24Q8NBT2 197 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 RSAD2Q8WXG1 361 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 SLC39A13Q96H72 371 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 PIWIL1Q96J94 861 aaKnown RBP9.05□□□□□ -0.96
COL28A1-205ENST00000453441 BTN2A3PQ96KV6 586 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 EIF3CQ99613 913 aaKnown RBP9.05□□□□□ -0.96
COL28A1-205ENST00000453441 CHP1Q99653 195 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 CNPY3Q9BT09 278 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 PLA2G2FQ9BZM2 168 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 GKN1Q9NS71 199 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 DDIT4Q9NX09 232 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 TAS2R14Q9NYV8 317 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 MARK1Q9P0L2 795 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 SFMBT1Q9UHJ3 866 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 NUDT5Q9UKK9 219 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 F5P12259 2224 aa9.05□□□□□ -0.96
COL28A1-205ENST00000453441 CUL9Q8IWT3 2517 aa9.04□□□□□ -0.96
COL28A1-205ENST00000453441 TYW5A2RUC4 315 aaKnown RBP9.04□□□□□ -0.96
COL28A1-205ENST00000453441 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.04□□□□□ -0.96
COL28A1-205ENST00000453441 M0QYT0 321 aa9.04□□□□□ -0.96
COL28A1-205ENST00000453441 MDM4O15151 490 aa9.04□□□□□ -0.96
COL28A1-205ENST00000453441 GRAP2O75791 330 aa9.04□□□□□ -0.96
COL28A1-205ENST00000453441 CYBBP04839 570 aa9.04□□□□□ -0.96
COL28A1-205ENST00000453441 CYP1A2P05177 515 aa9.04□□□□□ -0.96
COL28A1-205ENST00000453441 IRF1P10914 325 aa9.04□□□□□ -0.96
COL28A1-205ENST00000453441 ABCB4P21439 1286 aa9.04□□□□□ -0.96
COL28A1-205ENST00000453441 CORO1AP31146 461 aaKnown RBP9.04□□□□□ -0.96
COL28A1-205ENST00000453441 RFC1P35251 1148 aaPredicted RBP9.04□□□□□ -0.96
COL28A1-205ENST00000453441 FLT3P36888 993 aa9.04□□□□□ -0.96
COL28A1-205ENST00000453441 EIF2DP41214 584 aaKnown RBP9.04□□□□□ -0.96
COL28A1-205ENST00000453441 CXCR3P49682 368 aa9.04□□□□□ -0.96
COL28A1-205ENST00000453441 GALCP54803 685 aa9.04□□□□□ -0.96
COL28A1-205ENST00000453441 RAB15P59190 212 aa9.04□□□□□ -0.96
COL28A1-205ENST00000453441 RNASE9P60153 205 aaKnown RBP9.04□□□□□ -0.96
COL28A1-205ENST00000453441 KRT83P78385 493 aa9.04□□□□□ -0.96
COL28A1-205ENST00000453441 GAD2Q05329 585 aa9.04□□□□□ -0.96
COL28A1-205ENST00000453441 DEUP1Q05D60 604 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms