RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 RBBP8NLQ8NC74 664 aaPredicted RBP18.78■□□□□ 0.6
SQSTM1-204ENST00000453046 KCTD13Q8WZ19 329 aa18.78■□□□□ 0.6
SQSTM1-204ENST00000453046 TFAP2BQ92481 460 aa18.78■□□□□ 0.6
SQSTM1-204ENST00000453046 DDX1Q92499 740 aaKnown RBP18.78■□□□□ 0.6
SQSTM1-204ENST00000453046 SHC3Q92529 594 aa18.78■□□□□ 0.6
SQSTM1-204ENST00000453046 EDEM1Q92611 657 aa18.78■□□□□ 0.6
SQSTM1-204ENST00000453046 TCEAL3Q969E4 200 aa18.78■□□□□ 0.6
SQSTM1-204ENST00000453046 CNGB3Q9NQW8 809 aa18.78■□□□□ 0.6
SQSTM1-204ENST00000453046 RXFP3Q9NSD7 469 aa18.78■□□□□ 0.6
SQSTM1-204ENST00000453046 ABCC13Q9NSE7 274 aa18.78■□□□□ 0.6
SQSTM1-204ENST00000453046 AIPL1Q9NZN9 384 aa18.78■□□□□ 0.6
SQSTM1-204ENST00000453046 ABCA7Q8IZY2 2146 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 SPTBN2O15020 2390 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 YJEFN3A6XGL0 299 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 E7ENQ6 273 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 PENKP01210 267 aaPredicted RBP18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 CISD3P0C7P0 127 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 SKILP12757 684 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 SOX5P35711 763 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 HARS2P49590 506 aaKnown RBP18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 CNGA2Q16280 664 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 ASIC2Q16515 512 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 FYB2Q5VWT5 728 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 E4F1Q66K89 784 aaPredicted RBP18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 TMTC1Q8IUR5 882 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 DDI1Q8WTU0 396 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 ERLEC1Q96DZ1 483 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 KREMEN1Q96MU8 473 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 ACOX2Q99424 681 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 SFMBT1Q9UHJ3 866 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 HCN2Q9UL51 889 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 ZKSCAN5Q9Y2L8 839 aa18.77■□□□□ 0.6
SQSTM1-204ENST00000453046 NCOR2Q9Y618 2525 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 PIK3R2O00459 728 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 CCDC172P0C7W6 258 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 FERP16591 822 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 GABRG2P18507 467 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 BRD2P25440 801 aaKnown RBP18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 PRKCIP41743 596 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 LIMK1P53667 647 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 DAOAP59103 153 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 PKDCCQ504Y2 493 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 PPM1JQ5JR12 505 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 STPG1Q5TH74 334 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 RNF43Q68DV7 783 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 PMF1Q6P1K2 205 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 WDR59Q6PJI9 974 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 ARMCX6Q7L4S7 300 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 BHLHA9Q7RTU4 235 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 TMEFF1Q8IYR6 380 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 UCMAQ8WVF2 138 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 PIGKQ92643 395 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 GOLGA1Q92805 767 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 CACNA2D2Q9NY47 1150 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 FBXO10Q9UK96 956 aa18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 HBS1LQ9Y450 684 aaKnown RBP18.76■□□□□ 0.59
SQSTM1-204ENST00000453046 KHNYNO15037 678 aaKnown RBP18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 KRT5P13647 590 aa18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 TRIP4Q15650 581 aaPredicted RBP18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 ARHGAP44Q17R89 818 aa18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 MAP7D1Q3KQU3 841 aa18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 SCML4Q8N228 414 aa18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 CPXM2Q8N436 756 aa18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 FRMD1Q8N878 549 aa18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 IPO4Q8TEX9 1081 aaKnown RBP18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 SLC35F5Q8WV83 523 aa18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 ZNF830Q96NB3 372 aaPredicted RBP18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 GABRG3Q99928 467 aa18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 EDEM2Q9BV94 578 aa18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 CALCOCO1Q9P1Z2 691 aa18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 SLC27A6Q9Y2P4 619 aa18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 BZW2Q9Y6E2 419 aaKnown RBP18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 THADAQ6YHU6 1953 aa18.75■□□□□ 0.59
SQSTM1-204ENST00000453046 A0A1W2PQF6 199 aa18.74■□□□□ 0.59
SQSTM1-204ENST00000453046 SSU72P8A0A1W2PR75 194 aa18.74■□□□□ 0.59
SQSTM1-204ENST00000453046 GFRA2O00451 464 aa18.74■□□□□ 0.59
SQSTM1-204ENST00000453046 CALCAP01258 141 aa18.74■□□□□ 0.59
SQSTM1-204ENST00000453046 SERPING1P05155 500 aa18.74■□□□□ 0.59
SQSTM1-204ENST00000453046 STARD3Q14849 445 aa18.74■□□□□ 0.59
SQSTM1-204ENST00000453046 MPPE1Q53F39 396 aa18.74■□□□□ 0.59
SQSTM1-204ENST00000453046 FAM71AQ8IYT1 594 aa18.74■□□□□ 0.59
SQSTM1-204ENST00000453046 IRGQQ8WZA9 623 aa18.74■□□□□ 0.59
SQSTM1-204ENST00000453046 P2RY11Q96G91 374 aa18.74■□□□□ 0.59
SQSTM1-204ENST00000453046 HSFY1Q96LI6 401 aa18.74■□□□□ 0.59
SQSTM1-204ENST00000453046 ZSWIM1Q9BR11 485 aa18.74■□□□□ 0.59
SQSTM1-204ENST00000453046 MBD1Q9UIS9 605 aaPredicted RBP18.74■□□□□ 0.59
SQSTM1-204ENST00000453046 RAD54BQ9Y620 910 aa18.74■□□□□ 0.59
SQSTM1-204ENST00000453046 WASH3PC4AMC7 463 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 TSPAN3O60637 253 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 ZNF217O75362 1048 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 FBXO21O94952 628 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 RPL6Q02878 288 aaKnown RBP18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 ARID5AQ03989 594 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 MAPK8IP2Q13387 824 aaPredicted RBP18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 E2F5Q15329 346 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 GEN1Q17RS7 908 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 TDRD12Q587J7 1177 aaKnown RBP18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 SPDYCQ5MJ68 293 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms