RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 KLHL8Q9P2G9 620 aaPredicted RBP6.22□□□□□ -1.41
VPS50-205ENST00000441602 SAE1Q9UBE0 346 aaPredicted RBP6.22□□□□□ -1.41
VPS50-205ENST00000441602 MTRRQ9UBK8 725 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 SLC24A2Q9UI40 661 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 NFS1Q9Y697 457 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 A0A1W2PQH9 124 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 MTMR11A4FU01 709 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 SRRM3A6NNA2 597 aaPredicted RBP6.22□□□□□ -1.41
VPS50-205ENST00000441602 CSH1P0DML2 217 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 CSH2P0DML3 217 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 ETS1P14921 441 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 IL4RP24394 825 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 IGFBP6P24592 240 aaPredicted RBP6.22□□□□□ -1.41
VPS50-205ENST00000441602 HPDP32754 393 aaPredicted RBP6.22□□□□□ -1.41
VPS50-205ENST00000441602 STX2P32856 288 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 ATXN1P54253 815 aaKnown RBP6.22□□□□□ -1.41
VPS50-205ENST00000441602 GNGT1P63211 74 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 PPIGQ13427 754 aaKnown RBP eCLIP6.22□□□□□ -1.41
VPS50-205ENST00000441602 TIGD7Q6NT04 549 aaPredicted RBP6.22□□□□□ -1.41
VPS50-205ENST00000441602 RWDD4Q6NW29 188 aaKnown RBP6.22□□□□□ -1.41
VPS50-205ENST00000441602 CCNJLQ8IV13 435 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 GPR65Q8IYL9 337 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 CPT1BQ92523 772 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 C9orf72Q96LT7 481 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 DDX50Q9BQ39 737 aaKnown RBP6.22□□□□□ -1.41
VPS50-205ENST00000441602 GPR62Q9BZJ7 368 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 MTIF3Q9H2K0 278 aaKnown RBP6.22□□□□□ -1.41
VPS50-205ENST00000441602 WDR6Q9NNW5 1121 aaKnown RBP6.22□□□□□ -1.41
VPS50-205ENST00000441602 EIF2B3Q9NR50 452 aaKnown RBP6.22□□□□□ -1.41
VPS50-205ENST00000441602 MTMR10Q9NXD2 777 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 DTLQ9NZJ0 730 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 SEPT10Q9P0V9 454 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 HSFX1Q9UBD0 423 aa6.22□□□□□ -1.41
VPS50-205ENST00000441602 AFF4Q9UHB7 1163 aaKnown RBP6.22□□□□□ -1.41
VPS50-205ENST00000441602 ERI2A8K979 691 aaKnown RBP6.21□□□□□ -1.42
VPS50-205ENST00000441602 TNFRSF10BO14763 440 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 KIAA0355O15063 1070 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 LPXNO60711 386 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 DGKIO75912 1065 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 TIMP1P01033 207 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 ALDH1A3P47895 512 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 GATMP50440 423 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 CACNA2D1P54289 1103 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 NRG1Q02297 640 aaPredicted RBP6.21□□□□□ -1.42
VPS50-205ENST00000441602 GBE1Q04446 702 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 DPYSQ14117 519 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 TRIP4Q15650 581 aaPredicted RBP6.21□□□□□ -1.42
VPS50-205ENST00000441602 PARP6Q2NL67 630 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 ANO4Q32M45 955 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 RAB6CQ53S08 254 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 C10orf120Q5SQS8 335 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 NUGGCQ68CJ6 796 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 NAT8LQ8N9F0 302 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 ADAM32Q8TC27 787 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 IGSF21Q96ID5 467 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 PGLYRP2Q96PD5 576 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 NAT9Q9BTE0 207 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 RAB6CQ9H0N0 254 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 ARHGEF38Q9NXL2 777 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 NKIRAS1Q9NYS0 192 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 UXTQ9UBK9 157 aaPredicted RBP6.21□□□□□ -1.42
VPS50-205ENST00000441602 OR12D3Q9UGF7 316 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 TLR6Q9Y2C9 796 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 HBS1LQ9Y450 684 aaKnown RBP6.21□□□□□ -1.42
VPS50-205ENST00000441602 FARP1Q9Y4F1 1045 aaPredicted RBP6.21□□□□□ -1.42
VPS50-205ENST00000441602 PCDHB12Q9Y5F1 795 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 MFSD11O43934 449 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 SOD2P04179 222 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 FYNP06241 537 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 MLNP12872 115 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 DNAJB2P25686 324 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 MAGEA6P43360 314 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 PPP3CCP48454 512 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 MAGOHP61326 146 aaKnown RBP6.21□□□□□ -1.42
VPS50-205ENST00000441602 DDR2Q16832 855 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 OTUD1Q5VV17 481 aaPredicted RBP6.21□□□□□ -1.42
VPS50-205ENST00000441602 CCDC13Q8IYE1 715 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 ATPAF2Q8N5M1 289 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 ATAD1Q8NBU5 361 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 FBXO22Q8NEZ5 403 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 YME1L1Q96TA2 773 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 CYTH2Q99418 400 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 NSRP1Q9H0G5 558 aaKnown RBP6.21□□□□□ -1.42
VPS50-205ENST00000441602 SIK2Q9H0K1 926 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 USP29Q9HBJ7 922 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 TRPM5Q9NZQ8 1165 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 GMIPQ9P107 970 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 FETUBQ9UGM5 382 aa6.21□□□□□ -1.42
VPS50-205ENST00000441602 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.21□□□□□ -1.42
VPS50-205ENST00000441602 SLC38A8A6NNN8 435 aa6.2□□□□□ -1.42
VPS50-205ENST00000441602 RNF103O00237 685 aa6.2□□□□□ -1.42
VPS50-205ENST00000441602 DCLK1O15075 740 aa6.2□□□□□ -1.42
VPS50-205ENST00000441602 B4GALT3O60512 393 aa6.2□□□□□ -1.42
VPS50-205ENST00000441602 MSH2P43246 934 aa6.2□□□□□ -1.42
VPS50-205ENST00000441602 GDF10P55107 478 aa6.2□□□□□ -1.42
VPS50-205ENST00000441602 PITX1P78337 314 aaPredicted RBP6.2□□□□□ -1.42
VPS50-205ENST00000441602 KCNJ11Q14654 390 aa6.2□□□□□ -1.42
VPS50-205ENST00000441602 GPNMBQ14956 572 aa6.2□□□□□ -1.42
VPS50-205ENST00000441602 PRKD1Q15139 912 aaPredicted RBP6.2□□□□□ -1.42
VPS50-205ENST00000441602 SEPT7Q16181 437 aaKnown RBP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms