RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 EBLN1P0CF75 366 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 TOP1P11387 765 aaKnown RBP4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 AKR1B1P15121 316 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 IFNAR1P17181 557 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 LPOP22079 712 aaPredicted RBP4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 RPS12P25398 132 aaKnown RBP4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 CD6P30203 668 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 ABCG1P45844 678 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 UBE2HP62256 183 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 KRTAP1-1Q07627 177 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 EIF2B5Q13144 721 aaKnown RBP4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 TNFAIP1Q13829 316 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 GRM4Q14833 912 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 STK38Q15208 465 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 CCDC96Q2M329 555 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 RBM20Q5T481 1227 aaKnown RBP4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 APOBEC3HQ6NTF7 200 aaKnown RBP4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 CAVIN1Q6NZI2 390 aaKnown RBP4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 TMTC3Q6ZXV5 915 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 USP45Q70EL2 814 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 CCDC148Q8NFR7 591 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 POC1BQ8TC44 478 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 PIBF1Q8WXW3 757 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 CCDC17Q96LX7 622 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 IDI2Q9BXS1 227 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 TINAGL1Q9GZM7 467 aaPredicted RBP4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 WDCPQ9H6R7 721 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 TCP11L1Q9NUJ3 509 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 PI4KBQ9UBF8 816 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 AGAP1Q9UPQ3 857 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 PCDHA1Q9Y5I3 950 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 PCDHAC2Q9Y5I4 1007 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 RAD54BQ9Y620 910 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 WNT6Q9Y6F9 365 aa4.27□□□□□ -1.73
HMGB3P20-201ENST00000417997 WDR90Q96KV7 1748 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 ELP1O95163 1332 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 ADGRA2Q96PE1 1338 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 MANSC4A6NHS7 340 aaPredicted RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 PRSS29PA6NIE9 313 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 H3BUI4 141 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 SLC16A6O15403 523 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 PRPF3O43395 683 aaKnown RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 PROP1O75360 226 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 AHSGP02765 367 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 MMP1P03956 469 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 FDPSP14324 419 aaKnown RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 IBSPP21815 317 aaPredicted RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 SHMT1P34896 483 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 KRT2P35908 639 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 MMP14P50281 582 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 NHLH1Q02575 133 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 CEBPZQ03701 1054 aaKnown RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 ICA1Q05084 483 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 GABPAQ06546 454 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 CXCL9Q07325 125 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 SRSF4Q08170 494 aaKnown RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 TROAPQ12815 778 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 KIF22Q14807 665 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 TBCCQ15814 346 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 CERKLQ49MI3 558 aaPredicted RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 ASPRV1Q53RT3 343 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 BRDTQ58F21 947 aaPredicted RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 L1TD1Q5T7N2 865 aaKnown RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 ATL3Q6DD88 541 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 FAM173BQ6P4H8 233 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 ZNF788Q6ZQV5 615 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 CCDC73Q6ZRK6 1079 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 TMPRSS9Q7Z410 1059 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 DIS3L2Q8IYB7 885 aaKnown RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 CCDC12Q8WUD4 166 aaPredicted RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 SARAFQ96BY9 339 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 HSPBAP1Q96EW2 488 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 PRMT6Q96LA8 375 aaPredicted RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 AIFM3Q96NN9 605 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 MAP3K14Q99558 947 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 TIMP4Q99727 224 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 TMEM47Q9BQJ4 181 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 LZTS2Q9BRK4 669 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 GPR35Q9HC97 309 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 MYOZ2Q9NPC6 264 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 KMT5AQ9NQR1 393 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 ETAA1Q9NY74 926 aa4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 ZNF70Q9UC06 446 aaPredicted RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 SEC63Q9UGP8 760 aaKnown RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 HERC5Q9UII4 1024 aaKnown RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 NOL7Q9UMY1 257 aaKnown RBP4.26□□□□□ -1.73
HMGB3P20-201ENST00000417997 OTOFQ9HC10 1997 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 FRMPD2Q68DX3 1309 aaPredicted RBP4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 ZNF541Q9H0D2 1346 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 GOLGA6L3A6NEY3 463 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 DDTLA6NHG4 134 aaPredicted RBP4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 YEATS4O95619 227 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 SCG2P13521 617 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 ZFXP17010 805 aaPredicted RBP4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 CALML3P27482 149 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 DEKP35659 375 aaKnown RBP4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 ME1P48163 572 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms