RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 TKTP29401 623 aaKnown RBP10.17□□□□□ -0.78
SS18-203ENST00000415083 IDH3AP50213 366 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 RABGGTBP53611 331 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 MRPS35P82673 323 aaKnown RBP10.17□□□□□ -0.78
SS18-203ENST00000415083 CDK18Q07002 472 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 WASHC5Q12768 1159 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 BOLA3Q53S33 107 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 N4BP2L1Q5TBK1 243 aaPredicted RBP10.17□□□□□ -0.78
SS18-203ENST00000415083 TAPT1Q6NXT6 567 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 MARK2Q7KZI7 788 aaKnown RBP10.17□□□□□ -0.78
SS18-203ENST00000415083 BNIPLQ7Z465 357 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 PDCD7Q8N8D1 485 aaKnown RBP10.17□□□□□ -0.78
SS18-203ENST00000415083 TBCBQ99426 244 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 SHCBP1LQ9BZQ2 653 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 ASB7Q9H672 318 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 ZNF212Q9UDV6 495 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 PCDHGB4Q9UN71 923 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 DNAJC16Q9Y2G8 782 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 PCDHGB5Q9Y5G0 923 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 MAD1L1Q9Y6D9 718 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 IKBKGQ9Y6K9 419 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 LTBP3Q9NS15 1303 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 BIRC5O15392 142 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 ZNF286BP0CG31 522 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 MGAT1P26572 445 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 SFT2D3Q587I9 215 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 MCUR1Q96AQ8 359 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 C16orf70Q9BSU1 422 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 MCMBPQ9BTE3 642 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 NT5C1AQ9BXI3 368 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 EIF2AQ9BY44 585 aaKnown RBP10.17□□□□□ -0.78
SS18-203ENST00000415083 EBF3Q9H4W6 596 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 SYBUQ9NX95 663 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 ZNF236Q9UL36 1845 aa10.17□□□□□ -0.78
SS18-203ENST00000415083 DICER1Q9UPY3 1922 aaKnown RBP10.16□□□□□ -0.78
SS18-203ENST00000415083 A0A0G2JLL6 359 aaPredicted RBP10.16□□□□□ -0.78
SS18-203ENST00000415083 A8MXQ7 604 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 H3BNX3 289 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 SIN3BO75182 1162 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 AP1G2O75843 785 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 ZMPSTE24O75844 475 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 BEST1O76090 585 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 FESP07332 822 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 ALOX15P16050 662 aaPredicted RBP10.16□□□□□ -0.78
SS18-203ENST00000415083 CRABP2P29373 138 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 CDC16Q13042 620 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 ZNF772Q68DY9 489 aaPredicted RBP10.16□□□□□ -0.78
SS18-203ENST00000415083 POTEAQ6S8J7 498 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 PRRT2Q7Z6L0 340 aaPredicted RBP10.16□□□□□ -0.78
SS18-203ENST00000415083 CMC1Q7Z7K0 106 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 RSPH3Q86UC2 560 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 APOBEC3FQ8IUX4 373 aaKnown RBP10.16□□□□□ -0.78
SS18-203ENST00000415083 TMEM151AQ8N4L1 468 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 ZNF184Q99676 751 aaPredicted RBP10.16□□□□□ -0.78
SS18-203ENST00000415083 TUBB6Q9BUF5 446 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 PPP1R12CQ9BZL4 782 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 KLC2Q9H0B6 622 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 ZCWPW1Q9H0M4 648 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 C1orf21Q9H246 121 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 SPATS2LQ9NUQ6 558 aaKnown RBP10.16□□□□□ -0.78
SS18-203ENST00000415083 PRMT7Q9NVM4 692 aaPredicted RBP10.16□□□□□ -0.78
SS18-203ENST00000415083 GPRC5DQ9NZD1 345 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 PLXNB2O15031 1838 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 NUP205Q92621 2012 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.16□□□□□ -0.78
SS18-203ENST00000415083 HBP1O60381 514 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 SMIM24O75264 130 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 UBTFL6P0CB48 400 aaPredicted RBP10.16□□□□□ -0.78
SS18-203ENST00000415083 MAGEA12P43365 314 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 CCR10P46092 362 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 CSRP3P50461 194 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 MXRA7P84157 204 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 STX3Q13277 289 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 HIC1Q14526 733 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 SMYD5Q6GMV2 418 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 KYAT3Q6YP21 454 aaKnown RBP10.16□□□□□ -0.78
SS18-203ENST00000415083 PYDC1Q8WXC3 89 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 LRRC39Q96DD0 335 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 DHX35Q9H5Z1 703 aaKnown RBP10.16□□□□□ -0.78
SS18-203ENST00000415083 ITGA11Q9UKX5 1188 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 AP4E1Q9UPM8 1137 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 C2CD2Q9Y426 696 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 TANC1Q9C0D5 1861 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.16□□□□□ -0.78
SS18-203ENST00000415083 ZNF487B1APH4 448 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 ADM5C9JUS6 153 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 FAM72CH0Y354 149 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 PDE5AO76074 875 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 LGALS2P05162 132 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 SBK3P0C264 359 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 ERVK-10P10266 1014 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 ABCG1P45844 678 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 SLC1A6P48664 564 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 CACNA2D1P54289 1103 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 IRX1P78414 480 aaPredicted RBP10.16□□□□□ -0.78
SS18-203ENST00000415083 IRF9Q00978 393 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 FAM72AQ5TYM5 149 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 LPCAT4Q643R3 524 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 FAM72DQ6L9T8 149 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 ALKAL1Q6UXT8 129 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms