RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 RARAP10276 462 aa8.77□□□□□ -1
SYNE1-211ENST00000413186 OR1E1P30953 314 aa8.77□□□□□ -1
SYNE1-211ENST00000413186 SLC5A3P53794 718 aa8.77□□□□□ -1
SYNE1-211ENST00000413186 MRPS25P82663 173 aaKnown RBP8.77□□□□□ -1
SYNE1-211ENST00000413186 FAM126BQ8IXS8 530 aa8.77□□□□□ -1
SYNE1-211ENST00000413186 ZBED8Q8IZ13 594 aa8.77□□□□□ -1
SYNE1-211ENST00000413186 FAM71DQ8N9W8 422 aa8.77□□□□□ -1
SYNE1-211ENST00000413186 OR6P1Q8NGX9 317 aa8.77□□□□□ -1
SYNE1-211ENST00000413186 SKA2Q8WVK7 121 aaPredicted RBP8.77□□□□□ -1
SYNE1-211ENST00000413186 SMG7Q92540 1137 aaKnown RBP8.77□□□□□ -1
SYNE1-211ENST00000413186 ROPN1BQ9BZX4 212 aaPredicted RBP8.77□□□□□ -1
SYNE1-211ENST00000413186 ROPN1Q9HAT0 212 aaPredicted RBP8.77□□□□□ -1
SYNE1-211ENST00000413186 DNAJC17Q9NVM6 304 aaKnown RBP8.77□□□□□ -1
SYNE1-211ENST00000413186 PLA2G4CQ9UP65 541 aa8.77□□□□□ -1
SYNE1-211ENST00000413186 APOC4-APOC2K7ER74 178 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 RNF225M0QZC1 329 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-211ENST00000413186 APOC2P02655 101 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 KDELR1P24390 212 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 KCNJ1P48048 391 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 CCT5P48643 541 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 C15orf59Q2T9L4 293 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-211ENST00000413186 ZC3H12AQ5D1E8 599 aaKnown RBP8.77□□□□□ -1.01
SYNE1-211ENST00000413186 ATAT1Q5SQI0 421 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 MFSD7Q6UXD7 560 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 RAB44Q7Z6P3 723 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-211ENST00000413186 PSTKQ8IV42 348 aaKnown RBP8.77□□□□□ -1.01
SYNE1-211ENST00000413186 KREMEN2Q8NCW0 462 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 PPP4R1Q8TF05 950 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 NAT9Q9BTE0 207 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 BCAP29Q9UHQ4 241 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 PTPRJQ12913 1337 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 WDR90Q96KV7 1748 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 ESYT3A0FGR9 886 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 SOD2P04179 222 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 GALTP07902 379 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 PTPN2P17706 415 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 LMO2P25791 158 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 HTR7P34969 479 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 PTPN9P43378 593 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 VCPP55072 806 aaKnown RBP8.77□□□□□ -1.01
SYNE1-211ENST00000413186 PPP2R2AP63151 447 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 SMAD3P84022 425 aaKnown RBP8.77□□□□□ -1.01
SYNE1-211ENST00000413186 TWF1Q12792 350 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 ARHGEF7Q14155 803 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 STAT4Q14765 748 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 UGP2Q16851 508 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 FAM26DQ5JW98 314 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 BEND6Q5SZJ8 279 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-211ENST00000413186 KLC3Q6P597 504 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 MON1BQ7L1V2 547 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 XYLT1Q86Y38 959 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 CCNJLQ8IV13 435 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 TEKT4Q8WW24 435 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 TFAP2BQ92481 460 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 BADQ92934 168 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 ZNF670Q9BS34 389 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 TRHDEQ9UKU6 1024 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 RNASEH1O60930 286 aaKnown RBP8.77□□□□□ -1.01
SYNE1-211ENST00000413186 GJB6O95452 261 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 SESN2P58004 480 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-211ENST00000413186 TMED2Q15363 201 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 PLEKHG4Q58EX7 1191 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 MARC1Q5VT66 337 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 TRIML2Q8N7C3 387 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 TMEM174Q8WUU8 243 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 ARNTL2Q8WYA1 636 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 IGSF21Q96ID5 467 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 PPP1R10Q96QC0 940 aaKnown RBP8.77□□□□□ -1.01
SYNE1-211ENST00000413186 TRIM8Q9BZR9 551 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 ZSCAN32Q9NX65 697 aa8.77□□□□□ -1.01
SYNE1-211ENST00000413186 XPO7Q9UIA9 1087 aaKnown RBP8.77□□□□□ -1.01
SYNE1-211ENST00000413186 MYH11P35749 1972 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 RAD51CO43502 376 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 OPHN1O60890 802 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 ESRRBO95718 433 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 AGTP01019 485 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 GPR17Q13304 367 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 SDHAF4Q5VUM1 108 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 PDE12Q6L8Q7 609 aaKnown RBP8.76□□□□□ -1.01
SYNE1-211ENST00000413186 PMF1Q6P1K2 205 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 PRSS55Q6UWB4 352 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-211ENST00000413186 NOA1Q8NC60 698 aaKnown RBP8.76□□□□□ -1.01
SYNE1-211ENST00000413186 HJURPQ8NCD3 748 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-211ENST00000413186 CSGALNACT1Q8TDX6 532 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 RAPGEF5Q92565 580 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 BHMTQ93088 406 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 TGS1Q96RS0 853 aaKnown RBP8.76□□□□□ -1.01
SYNE1-211ENST00000413186 RBM15Q96T37 977 aaKnown RBP eCLIP8.76□□□□□ -1.01
SYNE1-211ENST00000413186 DPEP3Q9H4B8 488 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 ATP13A1Q9HD20 1204 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 TBC1D14Q9P2M4 693 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 NEU2Q9Y3R4 380 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 ATP9BO43861 1147 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 C8AP07357 584 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 HSPA8P11142 646 aaKnown RBP8.76□□□□□ -1.01
SYNE1-211ENST00000413186 RPL7AP62424 266 aaKnown RBP8.76□□□□□ -1.01
SYNE1-211ENST00000413186 UPP1Q16831 310 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 TTC30AQ86WT1 665 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 CALML6Q8TD86 181 aa8.76□□□□□ -1.01
SYNE1-211ENST00000413186 CYTH2Q99418 400 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms