RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 NSUN6Q8TEA1 469 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 LINC01599Q8WXQ3 324 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 RTP4Q96DX8 246 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 MCRS1Q96EZ8 462 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 FAXDC2Q96IV6 333 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 ZIM3Q96PE6 472 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 RPS6KC1Q96S38 1066 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 CGRRF1Q99675 332 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 TMEM109Q9BVC6 243 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 SELENOOQ9BVL4 669 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 PCIF1Q9H4Z3 704 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 UBN1Q9NPG3 1134 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 C19orf73Q9NVV2 129 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 THG1LQ9NWX6 298 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 MAGEC2Q9UBF1 373 aaPredicted RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 ARMCX3Q9UH62 379 aaPredicted RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 GTF3C4Q9UKN8 822 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 GUCA1BQ9UMX6 200 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 NOC2LQ9Y3T9 749 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 RWDD3Q9Y3V2 267 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 UTP18Q9Y5J1 556 aaKnown RBP eCLIP2.45□□□□□ -2.02
VPS54-202ENST00000354504 DENND3A2RUS2 1198 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 CTAGE9A4FU28 777 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 DDX39AO00148 427 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 PTGESO14684 152 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 FGF10O15520 208 aaPredicted RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 ASAP2O43150 1006 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 ZEB2O60315 1214 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 TCEA3O75764 348 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 IGLV3-25P01717 112 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 SYPP08247 313 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 CLTAP09496 248 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 NUDT17P0C025 328 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 FOSL1P15407 271 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 MAN1A1P33908 653 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 TRHRP34981 398 aaPredicted RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 GPD2P43304 727 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 MAGEA6P43360 314 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 RPL21P46778 160 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 GCLMP48507 274 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 PGFP49763 221 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 RBM5P52756 815 aaKnown RBP eCLIP2.45□□□□□ -2.02
VPS54-202ENST00000354504 CACNA2D1P54289 1103 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 TEKQ02763 1124 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 ZNF844Q08AG5 666 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 MAP4K2Q12851 820 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 STIM1Q13586 685 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 TNFAIP1Q13829 316 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 INAVAQ3KP66 663 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 XKR3Q5GH77 459 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 CCDC122Q5T0U0 273 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 SFRP5Q5T4F7 317 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 DRICH1Q6PGQ1 229 aaPredicted RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 INTS8Q75QN2 995 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 MIER3Q7Z3K6 550 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 RPAINQ86UA6 219 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 FAM114A1Q8IWE2 563 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 XXYLT1Q8NBI6 393 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 KLHDC9Q8NEP7 349 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 TRIM58Q8NG06 486 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 OR6Y1Q8NGX8 325 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 DENND1AQ8TEH3 1009 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 RFFLQ8WZ73 363 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 SECISBP2LQ93073 1101 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 RELTQ969Z4 430 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 TMEM143Q96AN5 459 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 CDADC1Q9BWV3 514 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 CELF4Q9BZC1 486 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 CD244Q9BZW8 370 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 LRRC27Q9C0I9 530 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 ELOVL4Q9GZR5 314 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 POLR3FQ9H1D9 316 aaPredicted RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 CDT1Q9H211 546 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 CCDC134Q9H6E4 229 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 METTL14Q9HCE5 456 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 RAB20Q9NX57 234 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 ZNF212Q9UDV6 495 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 FBXO40Q9UH90 709 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 PUF60Q9UHX1 559 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 ADAMTS6Q9UKP5 1117 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 BACE2Q9Y5Z0 518 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 ALG6Q9Y672 507 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 ATXN2Q99700 1313 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 CCDC66A2RUB6 948 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 GOLGA8IPA6NC78 632 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 GOLGA8JA6NMD2 632 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 E7ESA3 106 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 CYP26A1O43174 497 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 MGEA5O60502 916 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 USO1O60763 962 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 ATP2C2O75185 946 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 RTN2O75298 545 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 PTMAP06454 111 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 CYBAP13498 195 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 BPIP17213 487 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 TPP2P29144 1249 aaPredicted RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 EPHX2P34913 555 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 CHKAP35790 457 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 FZD5Q13467 585 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 LAPTM5Q13571 262 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms