RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 ADRA1BP35368 520 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 ARL4AP40617 200 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 TUBP50607 506 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 ERMARDQ5T6L9 678 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 USP33Q8TEY7 942 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 KCTD15Q96SI1 283 aaPredicted RBP9.53□□□□□ -0.88
USP4-202ENST00000351842 RHOXF2Q9BQY4 288 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 OXCT2Q9BYC2 517 aaPredicted RBP9.53□□□□□ -0.88
USP4-202ENST00000351842 PNPLA8Q9NP80 782 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 SNX12Q9UMY4 172 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 A0A0A6YYK5 440 aaPredicted RBP9.53□□□□□ -0.88
USP4-202ENST00000351842 KRIT1O00522 736 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 LRIG2O94898 1065 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 LTBRP36941 435 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 SGSHP51688 502 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 CARNMT1Q8N4J0 409 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 WDR6Q9NNW5 1121 aaKnown RBP9.53□□□□□ -0.88
USP4-202ENST00000351842 NDFIP2Q9NV92 336 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 TCF20Q9UGU0 1960 aaKnown RBP9.53□□□□□ -0.88
USP4-202ENST00000351842 PTPRDP23468 1912 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 GOLGA8CPA6NN73 597 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 NEDD8-MDP1E9PL57 170 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 STC2O76061 302 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 SLC7A5Q01650 507 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 SLC25A11Q02978 314 aaKnown RBP9.52□□□□□ -0.88
USP4-202ENST00000351842 NAIF1Q69YI7 327 aaPredicted RBP9.52□□□□□ -0.88
USP4-202ENST00000351842 PPP1R2P3Q6NXS1 205 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 ANKRD54Q6NXT1 300 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 KDELC2Q7Z4H8 507 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 RNF135Q8IUD6 432 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 NPAS3Q8IXF0 933 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 CMTM8Q8IZV2 173 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 CNPY4Q8N129 248 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 ARHGAP18Q8N392 663 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 GUCD1Q96NT3 240 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 SLC2A13Q96QE2 648 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 OSBPL8Q9BZF1 889 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 TDP1Q9NUW8 608 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 GTSE1Q9NYZ3 720 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 STK39Q9UEW8 545 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 LIMD1Q9UGP4 676 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 DPP7Q9UHL4 492 aa9.52□□□□□ -0.88
USP4-202ENST00000351842 R3HDM2Q9Y2K5 976 aaKnown RBP9.52□□□□□ -0.88
USP4-202ENST00000351842 USP15Q9Y4E8 981 aaPredicted RBP9.52□□□□□ -0.88
USP4-202ENST00000351842 LEFTY2O00292 366 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 KRT7P08729 469 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 ETFBP38117 255 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 PAFAH1B1P43034 410 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 GBE1Q04446 702 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 ALFQ53S48 1182 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 PIK3R6Q5UE93 754 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 GSTA5Q7RTV2 222 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 EFHBQ8N7U6 833 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 USP13Q92995 863 aaPredicted RBP9.52□□□□□ -0.89
USP4-202ENST00000351842 MYADMQ96S97 322 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 SMOC2Q9H3U7 446 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 CWC15Q9P013 229 aaKnown RBP9.52□□□□□ -0.89
USP4-202ENST00000351842 SLC12A6Q9UHW9 1150 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 HS3ST4Q9Y661 456 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 DMDP11532 3685 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 CCDC66A2RUB6 948 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 DDX3YO15523 660 aaKnown RBP9.52□□□□□ -0.89
USP4-202ENST00000351842 CD72P21854 359 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 COG7P83436 770 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 AUHQ13825 339 aaKnown RBP9.52□□□□□ -0.89
USP4-202ENST00000351842 SMAD1Q15797 465 aaKnown RBP9.52□□□□□ -0.89
USP4-202ENST00000351842 FAM78AQ5JUQ0 283 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 TANGO2Q6ICL3 276 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 PDE12Q6L8Q7 609 aaKnown RBP9.52□□□□□ -0.89
USP4-202ENST00000351842 C11orf63Q6NUN7 778 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 PDZD8Q8NEN9 1154 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 FGF14Q92915 247 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 LRRC3BQ96PB8 259 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 PCDH18Q9HCL0 1135 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 ACTL7AQ9Y615 435 aa9.52□□□□□ -0.89
USP4-202ENST00000351842 ANTXRLA6NF34 631 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 KCNU1A8MYU2 1149 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 H7C0C1 242 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 MOSPD3O75425 235 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 PECAM1P16284 738 aaPredicted RBP9.51□□□□□ -0.89
USP4-202ENST00000351842 KDELR1P24390 212 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 SLC6A4P31645 630 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 ATP5OP48047 213 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 SOX9P48436 509 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 FBXL22Q6P050 247 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 PARM1Q6UWI2 310 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 SPOCD1Q6ZMY3 1216 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 FAM43BQ6ZT52 329 aaPredicted RBP9.51□□□□□ -0.89
USP4-202ENST00000351842 IRGQQ8WZA9 623 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 IGSF8Q969P0 613 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 KRT12Q99456 494 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 KIF9Q9HAQ2 790 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 LSM7Q9UK45 103 aaKnown RBP9.51□□□□□ -0.89
USP4-202ENST00000351842 AGO1Q9UL18 857 aaKnown RBP9.51□□□□□ -0.89
USP4-202ENST00000351842 ESYT3A0FGR9 886 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 KCNK1O00180 336 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 OAS1P00973 400 aaKnown RBP9.51□□□□□ -0.89
USP4-202ENST00000351842 CETN2P41208 172 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 PTPN9P43378 593 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 SLC11A2P49281 568 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms