RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 VSTM1Q6UX27 236 aa16.83■□□□□ 0.29
SMARCA4-201ENST00000344626 CCDC124Q96CT7 223 aaKnown RBP16.83■□□□□ 0.29
SMARCA4-201ENST00000344626 PCMTD2Q9NV79 361 aa16.83■□□□□ 0.29
SMARCA4-201ENST00000344626 WHRNQ9P202 907 aa16.83■□□□□ 0.29
SMARCA4-201ENST00000344626 CFAP97Q9P2B7 532 aa16.83■□□□□ 0.29
SMARCA4-201ENST00000344626 TIMM44O43615 452 aa16.83■□□□□ 0.29
SMARCA4-201ENST00000344626 PTPN2P17706 415 aa16.83■□□□□ 0.29
SMARCA4-201ENST00000344626 MLLT1Q03111 559 aaPredicted RBP16.83■□□□□ 0.29
SMARCA4-201ENST00000344626 VARS2Q5ST30 1063 aaKnown RBP16.83■□□□□ 0.29
SMARCA4-201ENST00000344626 CCNI2Q6ZMN8 369 aaPredicted RBP16.83■□□□□ 0.29
SMARCA4-201ENST00000344626 FAM124AQ86V42 546 aa16.83■□□□□ 0.29
SMARCA4-201ENST00000344626 PTPN18Q99952 460 aa16.83■□□□□ 0.29
SMARCA4-201ENST00000344626 LRRC10BA6NIK2 292 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 GLP2RO95838 553 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 ERBB2P04626 1255 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 KCTD10Q9H3F6 313 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 ARHGAP28Q9P2N2 729 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 SYN3O14994 580 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 NRIP1P48552 1158 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 ARHGDIAP52565 204 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 FAM133BQ5BKY9 247 aaKnown RBP16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 NT5DC3Q86UY8 548 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 B3GALT6Q96L58 329 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 DUSP16Q9BY84 665 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 FAM124BQ9H5Z6 455 aaPredicted RBP16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 COG4Q9H9E3 785 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 SMARCAL1Q9NZC9 954 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 TFR2Q9UP52 801 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 A0A1B0GUA9 196 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 XPO1O14980 1071 aaKnown RBP16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 ADH1CP00326 375 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 MAPK8P45983 427 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 PPP3CCP48454 512 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 KYNUQ16719 465 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 FAM35AQ86V20 835 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 TDRD5Q8NAT2 981 aaKnown RBP16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 HJURPQ8NCD3 748 aaPredicted RBP16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 WWP1Q9H0M0 922 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 CNGB3Q9NQW8 809 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 ZFP69BQ9UJL9 534 aa16.83■□□□□ 0.28
SMARCA4-201ENST00000344626 A8MX80 341 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 GOLGA8RI6L899 631 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 ITGBL1O95965 494 aaPredicted RBP16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 MIPP30301 263 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 VSNL1P62760 191 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 AAK1Q2M2I8 961 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 FAM71AQ8IYT1 594 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 MYO1HQ8N1T3 1032 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 ACTL9Q8TC94 416 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 EPS8L1Q8TE68 723 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 ATG4AQ8WYN0 398 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 UBP1Q9NZI7 540 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 LNPEPQ9UIQ6 1025 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 CRYBG1Q9Y4K1 1723 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 RGPD5Q99666 1765 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 FRMD3A2A2Y4 597 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 DDX3XO00571 662 aaKnown RBP eCLIP16.82■□□□□ 0.282e-25■□□□□ 10.8
SMARCA4-201ENST00000344626 PRKCIP41743 596 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 SLC39A5Q6ZMH5 540 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 HTR3CQ8WXA8 447 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 SPDL1Q96EA4 605 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 MLXIPLQ9NP71 852 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 WWOXQ9NZC7 414 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 CEP290O15078 2479 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 CTSEP14091 401 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 MAPK9P45984 424 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 MBTD1Q05BQ5 628 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 STX3Q13277 289 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 MON1AQ86VX9 555 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 FAM228AQ86W67 206 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 MYOCQ99972 504 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 PRKD2Q9BZL6 878 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 IKZF4Q9H2S9 585 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 ZFP14Q9HCL3 533 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 GIMAP4Q9NUV9 329 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 NMRK1Q9NWW6 199 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 TBC1D4O60343 1298 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 AMPD1P23109 780 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 SERPINA4P29622 427 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 CDH17Q12864 832 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 LONRF1Q17RB8 773 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 TMCO4Q5TGY1 634 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 SGSM3Q96HU1 749 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 ASPSCR1Q9BZE9 553 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 TM6SF2Q9BZW4 377 aa16.82■□□□□ 0.28
SMARCA4-201ENST00000344626 SPEF2Q9C093 1822 aa16.81■□□□□ 0.28
SMARCA4-201ENST00000344626 NRP1O14786 923 aa16.81■□□□□ 0.28
SMARCA4-201ENST00000344626 TBL1XO60907 577 aa16.81■□□□□ 0.28
SMARCA4-201ENST00000344626 VCPP55072 806 aaKnown RBP16.81■□□□□ 0.28
SMARCA4-201ENST00000344626 CHRDL2Q6WN34 429 aa16.81■□□□□ 0.28
SMARCA4-201ENST00000344626 DNAAF5Q86Y56 855 aa16.81■□□□□ 0.28
SMARCA4-201ENST00000344626 RAD9AQ99638 391 aa16.81■□□□□ 0.28
SMARCA4-201ENST00000344626 ACTR5Q9H9F9 607 aaPredicted RBP16.81■□□□□ 0.28
SMARCA4-201ENST00000344626 RAD18Q9NS91 495 aa16.81■□□□□ 0.28
SMARCA4-201ENST00000344626 CAPN6Q9Y6Q1 641 aa16.81■□□□□ 0.28
SMARCA4-201ENST00000344626 HAUS5O94927 633 aa16.81■□□□□ 0.28
SMARCA4-201ENST00000344626 CALCAP01258 141 aa16.81■□□□□ 0.28
SMARCA4-201ENST00000344626 ZNF143P52747 638 aaPredicted RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms