RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 CDK17Q00537 523 aa23.83■■□□□ 1.41
LSM4-201ENST00000252816 KIAA1211LQ6NV74 962 aa23.83■■□□□ 1.41
LSM4-201ENST00000252816 ZNF397Q8NF99 534 aaPredicted RBP23.83■■□□□ 1.41
LSM4-201ENST00000252816 NEK11Q8NG66 645 aa23.83■■□□□ 1.41
LSM4-201ENST00000252816 WFDC5Q8TCV5 224 aa23.83■■□□□ 1.41
LSM4-201ENST00000252816 HMGB4Q8WW32 186 aa23.83■■□□□ 1.41
LSM4-201ENST00000252816 ERLEC1Q96DZ1 483 aa23.83■■□□□ 1.41
LSM4-201ENST00000252816 SPAG5Q96R06 1193 aa23.83■■□□□ 1.41
LSM4-201ENST00000252816 FAM204AQ9H8W3 233 aa23.83■■□□□ 1.41
LSM4-201ENST00000252816 PARD6AQ9NPB6 346 aa23.83■■□□□ 1.41
LSM4-201ENST00000252816 SPTBN4Q9H254 2564 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 SYCE3A1L190 88 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 SMTNL1A8MU46 457 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 TEX33O43247 280 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 DAB1O75553 588 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 APOEP02649 317 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 RPS24P62847 133 aaKnown RBP23.82■■□□□ 1.4
LSM4-201ENST00000252816 CDR2Q01850 454 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 PLK5Q496M5 336 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 USP39Q53GS9 565 aaKnown RBP23.82■■□□□ 1.4
LSM4-201ENST00000252816 C2CD6Q53TS8 623 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 MPP7Q5T2T1 576 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 NAA35Q5VZE5 725 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 ERICH1Q86X53 443 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 XYLT1Q86Y38 959 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 ZDHHC17Q8IUH5 632 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 OLIG1Q8TAK6 271 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 CPA5Q8WXQ8 436 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 SORCS1Q8WY21 1168 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 C18orf8Q96DM3 657 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 ZC3H10Q96K80 434 aaKnown RBP23.82■■□□□ 1.4
LSM4-201ENST00000252816 IRX2Q9BZI1 471 aaPredicted RBP23.82■■□□□ 1.4
LSM4-201ENST00000252816 DDIT4Q9NX09 232 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 ELOVL2Q9NXB9 296 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 THAP10Q9P2Z0 257 aaPredicted RBP23.82■■□□□ 1.4
LSM4-201ENST00000252816 RAD54BQ9Y620 910 aa23.82■■□□□ 1.4
LSM4-201ENST00000252816 SYNJ2BP-COX16A0A087WUM0 186 aa23.81■■□□□ 1.4
LSM4-201ENST00000252816 STAT1P42224 750 aa23.81■■□□□ 1.4
LSM4-201ENST00000252816 FMO1Q01740 532 aa23.81■■□□□ 1.4
LSM4-201ENST00000252816 SPEM2Q0P670 501 aa23.81■■□□□ 1.4
LSM4-201ENST00000252816 IQCB1Q15051 598 aa23.81■■□□□ 1.4
LSM4-201ENST00000252816 MS4A13Q5J8X5 152 aa23.81■■□□□ 1.4
LSM4-201ENST00000252816 SDE2Q6IQ49 451 aa23.81■■□□□ 1.4
LSM4-201ENST00000252816 ZNF677Q86XU0 584 aa23.81■■□□□ 1.4
LSM4-201ENST00000252816 HJURPQ8NCD3 748 aaPredicted RBP23.81■■□□□ 1.4
LSM4-201ENST00000252816 DDX50Q9BQ39 737 aaKnown RBP23.81■■□□□ 1.4
LSM4-201ENST00000252816 ADAM33Q9BZ11 813 aa23.81■■□□□ 1.4
LSM4-201ENST00000252816 DUSP15Q9H1R2 295 aaPredicted RBP23.81■■□□□ 1.4
LSM4-201ENST00000252816 ABCB8Q9NUT2 735 aa23.81■■□□□ 1.4
LSM4-201ENST00000252816 COX16Q9P0S2 106 aa23.81■■□□□ 1.4
LSM4-201ENST00000252816 CALCOCO1Q9P1Z2 691 aa23.81■■□□□ 1.4
LSM4-201ENST00000252816 STIM2Q9P246 746 aa23.81■■□□□ 1.4
LSM4-201ENST00000252816 BCCIPQ9P287 314 aaKnown RBP eCLIP23.81■■□□□ 1.4
LSM4-201ENST00000252816 STON1Q9Y6Q2 735 aa23.81■■□□□ 1.4
LSM4-201ENST00000252816 SPAG17Q6Q759 2223 aa23.81■■□□□ 1.4
LSM4-201ENST00000252816 KCNU1A8MYU2 1149 aa23.8■■□□□ 1.4
LSM4-201ENST00000252816 GABRG2P18507 467 aa23.8■■□□□ 1.4
LSM4-201ENST00000252816 BCKDHBP21953 392 aa23.8■■□□□ 1.4
LSM4-201ENST00000252816 NOS2P35228 1153 aa23.8■■□□□ 1.4
LSM4-201ENST00000252816 IL12RB1P42701 662 aa23.8■■□□□ 1.4
LSM4-201ENST00000252816 RNASE9P60153 205 aaKnown RBP23.8■■□□□ 1.4
LSM4-201ENST00000252816 EIF4HQ15056 248 aaKnown RBP23.8■■□□□ 1.4
LSM4-201ENST00000252816 OTUD1Q5VV17 481 aaPredicted RBP23.8■■□□□ 1.4
LSM4-201ENST00000252816 RAP1GAP2Q684P5 730 aa23.8■■□□□ 1.4
LSM4-201ENST00000252816 KIAA0907Q7Z7F0 614 aaPredicted RBP23.8■■□□□ 1.4
LSM4-201ENST00000252816 DDX51Q8N8A6 666 aaKnown RBP eCLIP23.8■■□□□ 1.4
LSM4-201ENST00000252816 RLN3Q8WXF3 142 aa23.8■■□□□ 1.4
LSM4-201ENST00000252816 BTN2A3PQ96KV6 586 aa23.8■■□□□ 1.4
LSM4-201ENST00000252816 CIPCQ9C0C6 399 aa23.8■■□□□ 1.4
LSM4-201ENST00000252816 RTN4Q9NQC3 1192 aaKnown RBP23.8■■□□□ 1.4
LSM4-201ENST00000252816 SLTMQ9NWH9 1034 aaKnown RBP eCLIP23.8■■□□□ 1.4
LSM4-201ENST00000252816 CYP1A1P04798 512 aaPredicted RBP23.79■■□□□ 1.4
LSM4-201ENST00000252816 TFE3P19532 575 aaPredicted RBP23.79■■□□□ 1.4
LSM4-201ENST00000252816 CD70P32970 193 aa23.79■■□□□ 1.4
LSM4-201ENST00000252816 MATKP42679 507 aa23.79■■□□□ 1.4
LSM4-201ENST00000252816 ENPP2Q13822 863 aa23.79■■□□□ 1.4
LSM4-201ENST00000252816 ZNF234Q14588 700 aa23.79■■□□□ 1.4
LSM4-201ENST00000252816 ADIPOR2Q86V24 386 aa23.79■■□□□ 1.4
LSM4-201ENST00000252816 LGI2Q8N0V4 545 aa23.79■■□□□ 1.4
LSM4-201ENST00000252816 CFAP52Q8N1V2 620 aa23.79■■□□□ 1.4
LSM4-201ENST00000252816 PGBD3Q8N328 593 aa23.79■■□□□ 1.4
LSM4-201ENST00000252816 FRMD1Q8N878 549 aa23.79■■□□□ 1.4
LSM4-201ENST00000252816 UCMAQ8WVF2 138 aa23.79■■□□□ 1.4
LSM4-201ENST00000252816 LMLNQ96KR4 655 aa23.79■■□□□ 1.4
LSM4-201ENST00000252816 GGA2Q9UJY4 613 aa23.79■■□□□ 1.4
LSM4-201ENST00000252816 TIMM44O43615 452 aa23.78■■□□□ 1.4
LSM4-201ENST00000252816 PABPC1P11940 636 aaKnown RBP23.78■■□□□ 1.4
LSM4-201ENST00000252816 TACR2P21452 398 aa23.78■■□□□ 1.4
LSM4-201ENST00000252816 CCR1P32246 355 aa23.78■■□□□ 1.4
LSM4-201ENST00000252816 GBP1P32455 592 aa23.78■■□□□ 1.4
LSM4-201ENST00000252816 SCNN1AP37088 669 aa23.78■■□□□ 1.4
LSM4-201ENST00000252816 P2RY2P41231 377 aa23.78■■□□□ 1.4
LSM4-201ENST00000252816 NME3Q13232 169 aa23.78■■□□□ 1.4
LSM4-201ENST00000252816 MAP7D1Q3KQU3 841 aa23.78■■□□□ 1.4
LSM4-201ENST00000252816 FAM102AQ5T9C2 384 aaPredicted RBP23.78■■□□□ 1.4
LSM4-201ENST00000252816 CHST9Q7L1S5 443 aa23.78■■□□□ 1.4
LSM4-201ENST00000252816 CHSY1Q86X52 802 aa23.78■■□□□ 1.4
LSM4-201ENST00000252816 ATP6V0D2Q8N8Y2 350 aa23.78■■□□□ 1.4
LSM4-201ENST00000252816 WFIKKN2Q8TEU8 576 aa23.78■■□□□ 1.4
LSM4-201ENST00000252816 LOXL4Q96JB6 756 aa23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms