RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 ACAD10Q6JQN1 1059 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 FSTL4Q6MZW2 842 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 OLFML1Q6UWY5 402 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 TPGS1Q6ZTW0 290 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 TOGARAM2Q6ZUX3 1019 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 H2AFVQ71UI9 128 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 BEND5Q7L4P6 421 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 C12orf40Q86WS4 652 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 DENND1CQ8IV53 801 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 MSANTD4Q8NCY6 345 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 PRSS33Q8NF86 280 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 ADAM32Q8TC27 787 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 DQX1Q8TE96 717 aaKnown RBP10.27□□□□□ -0.77
CLN3-261ENST00000637686 CD101Q93033 1021 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 PLD4Q96BZ4 506 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 C18orf8Q96DM3 657 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 PCDHB18PQ96TA0 734 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 P2RY13Q9BPV8 354 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.27□□□□□ -0.77
CLN3-261ENST00000637686 TRIM62Q9BVG3 475 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 DCLK3Q9C098 648 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 POPDC2Q9HBU9 364 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 SPHK2Q9NRA0 654 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 SPTLC3Q9NUV7 552 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 MYO1AQ9UBC5 1043 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 ZNF510Q9Y2H8 683 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 REXO2Q9Y3B8 237 aaKnown RBP10.27□□□□□ -0.77
CLN3-261ENST00000637686 HBS1LQ9Y450 684 aaKnown RBP10.27□□□□□ -0.77
CLN3-261ENST00000637686 MYOFQ9NZM1 2061 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 ZNF318Q5VUA4 2279 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 ESPNB1AK53 854 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 KIF2AO00139 706 aaPredicted RBP10.26□□□□□ -0.77
CLN3-261ENST00000637686 KRT86O43790 486 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 HSF2BPO75031 334 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 EGFP01133 1207 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 GLI1P08151 1106 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 TMEM253P0C7T8 217 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 MAGEA9P43362 315 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 GABRB2P47870 512 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 HADHBP55084 474 aaKnown RBP10.26□□□□□ -0.77
CLN3-261ENST00000637686 TBX4P57082 545 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 RNASE9P60153 205 aaKnown RBP10.26□□□□□ -0.77
CLN3-261ENST00000637686 C1QBPQ07021 282 aaKnown RBP10.26□□□□□ -0.77
CLN3-261ENST00000637686 KIF5AQ12840 1032 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 TCF15Q12870 199 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 CCINQ13939 588 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 LRRC32Q14392 662 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 DCAF6Q58WW2 860 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 DGKKQ5KSL6 1271 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 KIAA1328Q86T90 577 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 TAC4Q86UU9 113 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 XYLT1Q86Y38 959 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 ZDHHC17Q8IUH5 632 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 REXO1L1PQ8IX06 675 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 DEFB106AQ8N104 65 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 RNF10Q8N5U6 811 aaKnown RBP10.26□□□□□ -0.77
CLN3-261ENST00000637686 NAT16Q8N8M0 369 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 EXOC4Q96A65 974 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 SERPINB11Q96P15 392 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 PRRX2Q99811 253 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 KCNH6Q9H252 994 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 CHRDQ9H2X0 955 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 SEPT11Q9NVA2 429 aaKnown RBP10.26□□□□□ -0.77
CLN3-261ENST00000637686 SPATA6Q9NWH7 488 aaPredicted RBP10.26□□□□□ -0.77
CLN3-261ENST00000637686 ASNSD1Q9NWL6 643 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 LCMT1Q9UIC8 334 aa10.26□□□□□ -0.77
CLN3-261ENST00000637686 WDFY4Q6ZS81 3184 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 NEDD8-MDP1E9PL57 170 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 H0Y858 1186 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 HOXC11O43248 304 aaPredicted RBP10.25□□□□□ -0.77
CLN3-261ENST00000637686 MTA2O94776 668 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 IGLV3-27P01718 113 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 CALB1P05937 261 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 TYRP14679 529 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 DRD1P21728 446 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 MMP8P22894 467 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 CHKAP35790 457 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 SCNN1AP37088 669 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 NSFP46459 744 aaKnown RBP10.25□□□□□ -0.77
CLN3-261ENST00000637686 PITX1P78337 314 aaPredicted RBP10.25□□□□□ -0.77
CLN3-261ENST00000637686 MTAPQ13126 283 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 GAS6Q14393 721 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 ANGPT1Q15389 498 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 IFI16Q16666 785 aaKnown RBP10.25□□□□□ -0.77
CLN3-261ENST00000637686 MMS22LQ6ZRQ5 1243 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 Q6ZS52 159 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 MON1BQ7L1V2 547 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 SLC26A9Q7LBE3 791 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 PHLDB2Q86SQ0 1253 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 C1orf210Q8IVY1 113 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 SFTPA1Q8IWL2 248 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 UNC45BQ8IWX7 931 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 ACRBPQ8NEB7 543 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 CTNNBL1Q8WYA6 563 aaPredicted RBP10.25□□□□□ -0.77
CLN3-261ENST00000637686 BHMTQ93088 406 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 SLC2A13Q96QE2 648 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 PNKPQ96T60 521 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 DESI2Q9BSY9 194 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 BBS2Q9BXC9 721 aa10.25□□□□□ -0.77
CLN3-261ENST00000637686 WDR35Q9P2L0 1181 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms