RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 LRRC27Q9C0I9 530 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 GZF1Q9H116 711 aaPredicted RBP10.63□□□□□ -0.71
TRIM28-210ENST00000597618 SDCBP2Q9H190 292 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 NMUR1Q9HB89 426 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 SGK2Q9HBY8 427 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 FAM49BQ9NUQ9 324 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 NUDT5Q9UKK9 219 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 SMC3Q9UQE7 1217 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 UBE4BO95155 1302 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 HHLA1C9JL84 531 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 TGFB1I1O43294 461 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 STX6O43752 255 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 BRINP1O60477 761 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 DNTTP04053 509 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 ITGAVP06756 1048 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 ADORA2BP29275 332 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 NDST1P52848 882 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 CXADRP78310 365 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 PDE4CQ08493 712 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 DNAJC3Q13217 504 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 ILKQ13418 452 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 TAF1BQ53T94 588 aaPredicted RBP10.62□□□□□ -0.71
TRIM28-210ENST00000597618 TMEM215Q68D42 235 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 FBXL19Q6PCT2 694 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 PCSK4Q6UW60 755 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 CLEC20AQ6ZU45 233 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 EPM2AIP1Q7L775 607 aaPredicted RBP10.62□□□□□ -0.71
TRIM28-210ENST00000597618 CCDC186Q7Z3E2 898 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 GATAD2AQ86YP4 633 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 CPXM2Q8N436 756 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 C12orf29Q8N999 325 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 ZNF507Q8TCN5 953 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 DDI1Q8WTU0 396 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 GOLGA1Q92805 767 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 WBP1Q96G27 269 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 CLIC6Q96NY7 704 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 HNRNPABQ99729 332 aaKnown RBP10.62□□□□□ -0.71
TRIM28-210ENST00000597618 ORAI3Q9BRQ5 295 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 TNMDQ9H2S6 317 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 TMEM245Q9H330 911 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 CLIC5Q9NZA1 410 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 HMGXB4Q9UGU5 601 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 RASAL2Q9UJF2 1139 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 AGO1Q9UL18 857 aaKnown RBP10.62□□□□□ -0.71
TRIM28-210ENST00000597618 CLEC4EQ9ULY5 219 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 PLA2G4CQ9UP65 541 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 CLIC4Q9Y696 253 aa10.62□□□□□ -0.71
TRIM28-210ENST00000597618 NUMA1Q14980 2115 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 A0A1W2PPC4 97 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 CBX4O00257 560 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 CLIC2O15247 247 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 IGHV4-34P06331 123 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 HMBSP08397 361 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 ARRB1P49407 418 aaPredicted RBP10.61□□□□□ -0.71
TRIM28-210ENST00000597618 KIF11P52732 1056 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 RPS14P62263 151 aaKnown RBP10.61□□□□□ -0.71
TRIM28-210ENST00000597618 RHDQ02161 417 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 CCDC173Q0VFZ6 552 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 RABEP1Q15276 862 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 TBC1D25Q3MII6 688 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 FAM26FQ5R3K3 315 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 ZNF776Q68DI1 518 aaPredicted RBP10.61□□□□□ -0.71
TRIM28-210ENST00000597618 KIAA0895LQ68EN5 471 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 SCD5Q86SK9 330 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 ERICH1Q86X53 443 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 DENND1CQ8IV53 801 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 SPACA3Q8IXA5 215 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 SAP25Q8TEE9 199 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 WFIKKN2Q8TEU8 576 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 CLMPQ9H6B4 373 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 CGNQ9P2M7 1197 aaKnown RBP10.61□□□□□ -0.71
TRIM28-210ENST00000597618 STRIP2Q9ULQ0 834 aa10.61□□□□□ -0.71
TRIM28-210ENST00000597618 TMEM131Q92545 1883 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 A0A087X0B3 334 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 CYSRT1A8MQ03 144 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 EXOC3O60645 756 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 EPHA8P29322 1005 aaPredicted RBP10.6□□□□□ -0.71
TRIM28-210ENST00000597618 CASP4P49662 377 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 UCNP55089 124 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 ASIC1P78348 528 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 EFEMP1Q12805 493 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 SFSWAPQ12872 951 aaKnown RBP10.6□□□□□ -0.71
TRIM28-210ENST00000597618 SGSM1Q2NKQ1 1148 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 MPPE1Q53F39 396 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 USP30Q70CQ3 517 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 NELFCDQ8IXH7 590 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 C12orf56Q8IXR9 622 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 FAM217AQ8IXS0 508 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 AHI1Q8N157 1196 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 CACTIN-AS1Q8N1I8 211 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 ARHGAP18Q8N392 663 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 EID2Q8N6I1 236 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 ZNF366Q8N895 744 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 CYB5D2Q8WUJ1 264 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 RFFLQ8WZ73 363 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 TSC1Q92574 1164 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 TAF4BQ92750 862 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 SLC6A18Q96N87 628 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 LGMNQ99538 433 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 PANK2Q9BZ23 570 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms