RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 CPSF6Q16630 551 aaKnown RBP eCLIP10.84□□□□□ -0.67
SS18-221ENST00000582448 FAM187BQ17R55 369 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 PABPC1LQ4VXU2 614 aaKnown RBP10.84□□□□□ -0.67
SS18-221ENST00000582448 CCDC122Q5T0U0 273 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 IQCEQ6IPM2 695 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 SLC27A1Q6PCB7 646 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 SYT10Q6XYQ8 523 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 ZNF852Q6ZMS4 543 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 ENOSF1Q7L5Y1 443 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 FRMD6Q96NE9 622 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 CGRRF1Q99675 332 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 ADPGKQ9BRR6 497 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 DDX23Q9BUQ8 820 aaKnown RBP10.84□□□□□ -0.67
SS18-221ENST00000582448 SIX2Q9NPC8 291 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 UBE2TQ9NPD8 197 aaPredicted RBP10.84□□□□□ -0.67
SS18-221ENST00000582448 HEBP1Q9NRV9 189 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 RAB20Q9NX57 234 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 SNTG2Q9NY99 539 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 ARHGAP20Q9P2F6 1191 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 DNMT3BQ9UBC3 853 aaKnown RBP10.84□□□□□ -0.67
SS18-221ENST00000582448 DNAI1Q9UI46 699 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 RAB23Q9ULC3 237 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 MRPS23Q9Y3D9 190 aaKnown RBP10.84□□□□□ -0.67
SS18-221ENST00000582448 COL4A3Q01955 1670 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 DOCK8Q8NF50 2099 aa10.84□□□□□ -0.67
SS18-221ENST00000582448 MYH11P35749 1972 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 DMXL1Q9Y485 3027 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 F8VZ95 297 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 RNGTTO60942 597 aaKnown RBP10.83□□□□□ -0.68
SS18-221ENST00000582448 IL18RAPO95256 599 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 PAPLNO95428 1278 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 THP07101 528 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 MCF2P10911 925 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 PRKCIP41743 596 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 PIK3CAP42336 1068 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 MAGEA1P43355 309 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 LMNB2Q03252 620 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 CDK5R2Q13319 367 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 TUSC3Q13454 348 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 DRAP1Q14919 205 aaPredicted RBP10.83□□□□□ -0.68
SS18-221ENST00000582448 ARHGAP44Q17R89 818 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 RSPO2Q6UXX9 243 aaPredicted RBP10.83□□□□□ -0.68
SS18-221ENST00000582448 PRR23BQ6ZRT6 265 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 ZNF662Q6ZS27 426 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 WDR49Q8IV35 697 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 BRSK2Q8IWQ3 736 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 GPR65Q8IYL9 337 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 PPM1KQ8N3J5 372 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 ZBTB44Q8NCP5 570 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 NELL2Q99435 816 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 RTKNQ9BST9 563 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 OSBPL6Q9BZF3 934 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 GUCA1BQ9UMX6 200 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 MRPS17Q9Y2R5 130 aaKnown RBP10.83□□□□□ -0.68
SS18-221ENST00000582448 COQ4Q9Y3A0 265 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 PCDHA13Q9Y5I0 950 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 DOCK6Q96HP0 2047 aa10.83□□□□□ -0.68
SS18-221ENST00000582448 A0A1B0GUA9 196 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 CTAGE9A4FU28 777 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 TBC1D4O60343 1298 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 LCA5LO95447 670 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 TNNC2P02585 160 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 RHOP08100 348 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 CLTAP09496 248 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 TMEM191BP0C7N4 346 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 IGFBP6P24592 240 aaPredicted RBP10.82□□□□□ -0.68
SS18-221ENST00000582448 USP8P40818 1118 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 MAGEA9P43362 315 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 ARPP19P56211 112 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 JAM2P57087 298 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 POU5F1Q01860 360 aaKnown RBP10.82□□□□□ -0.68
SS18-221ENST00000582448 APBA1Q02410 837 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 ADCY1Q08828 1119 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 MTAPQ13126 283 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 TUBB2AQ13885 445 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 SLC18A3Q16572 532 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 IFI16Q16666 785 aaKnown RBP10.82□□□□□ -0.68
SS18-221ENST00000582448 ST3GAL2Q16842 350 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 ZNF569Q5MCW4 686 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 C1orf220Q5T0J3 134 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 TANGO2Q6ICL3 276 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 ZSWIM2Q8NEG5 633 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 PLEKHO2Q8TD55 490 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 ANKRD36BP1Q96IX9 119 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 ZBTB45Q96K62 511 aaPredicted RBP10.82□□□□□ -0.68
SS18-221ENST00000582448 ALS2CR12Q96Q35 445 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 TUBB2BQ9BVA1 445 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 CXCL16Q9H2A7 254 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 EPC1Q9H2F5 836 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 RPF1Q9H9Y2 349 aaKnown RBP10.82□□□□□ -0.68
SS18-221ENST00000582448 PDE11AQ9HCR9 933 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 PARD6AQ9NPB6 346 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.82□□□□□ -0.68
SS18-221ENST00000582448 AK5Q9Y6K8 562 aa10.82□□□□□ -0.68
SS18-221ENST00000582448 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.81□□□□□ -0.68
SS18-221ENST00000582448 PTGESO14684 152 aa10.81□□□□□ -0.68
SS18-221ENST00000582448 CYP26A1O43174 497 aa10.81□□□□□ -0.68
SS18-221ENST00000582448 TACC1O75410 805 aa10.81□□□□□ -0.68
SS18-221ENST00000582448 B3GAT3O94766 335 aa10.81□□□□□ -0.68
SS18-221ENST00000582448 PLEKP08567 350 aaPredicted RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms