RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 LATS1O95835 1130 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 GJA1P17302 382 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 FSHRP23945 695 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 KDELR1P24390 212 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 PTPN7P35236 360 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 AVPR1AP37288 418 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 MTHFRP42898 656 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 HARS2P49590 506 aaKnown RBP11.14□□□□□ -0.63
SS18-213ENST00000579640 CDH6P55285 790 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 KRT81Q14533 505 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 PPP2R5EQ16537 467 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 ATP13A4Q4VNC1 1196 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 CMTM8Q8IZV2 173 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 BTN2A3PQ96KV6 586 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 PSMB7Q99436 277 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 DCLK3Q9C098 648 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 S1PR5Q9H228 398 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 DHX35Q9H5Z1 703 aaKnown RBP11.14□□□□□ -0.63
SS18-213ENST00000579640 RCOR3Q9P2K3 495 aaPredicted RBP11.14□□□□□ -0.63
SS18-213ENST00000579640 CDC23Q9UJX2 597 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 ARHGAP26Q9UNA1 814 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 CPQQ9Y646 472 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 C2orf16Q68DN1 1984 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 LAMA3Q16787 3333 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 PAGE1O75459 146 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 STC2O76061 302 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 PYGMP11217 842 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 CEBPBP17676 345 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 L1CAMP32004 1257 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 HTR7P34969 479 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 ARSEP51690 589 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 NRG1Q02297 640 aaPredicted RBP11.13□□□□□ -0.63
SS18-213ENST00000579640 DCAF12L1Q5VU92 463 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 CCDC50Q8IVM0 306 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 MICALL1Q8N3F8 863 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 RASGEF1CQ8N431 466 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 RAPGEF5Q92565 580 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 MSLNLQ96KJ4 702 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 ZFRQ96KR1 1074 aaKnown RBP11.13□□□□□ -0.63
SS18-213ENST00000579640 C1orf74Q96LT6 269 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 NECTIN4Q96NY8 510 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 SLC22A12Q96S37 553 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 CYP2S1Q96SQ9 504 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 NAP1L3Q99457 506 aaPredicted RBP11.13□□□□□ -0.63
SS18-213ENST00000579640 CDX2Q99626 313 aaPredicted RBP11.13□□□□□ -0.63
SS18-213ENST00000579640 ZNF670Q9BS34 389 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 SLITRK6Q9H5Y7 841 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 PRDM16Q9HAZ2 1276 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 PCDH18Q9HCL0 1135 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 GDE1Q9NZC3 331 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 LSM7Q9UK45 103 aaKnown RBP11.13□□□□□ -0.63
SS18-213ENST00000579640 TTC7AQ9ULT0 858 aaPredicted RBP11.13□□□□□ -0.63
SS18-213ENST00000579640 EFR3BQ9Y2G0 817 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 ZNF510Q9Y2H8 683 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 DOCK6Q96HP0 2047 aa11.13□□□□□ -0.63
SS18-213ENST00000579640 H3BRJ5 948 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 NRG2O14511 850 aaPredicted RBP11.12□□□□□ -0.63
SS18-213ENST00000579640 CEP104O60308 925 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 HMBSP08397 361 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 TCF3P15923 654 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 CXCR5P32302 372 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 LTBRP36941 435 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 ARL4AP40617 200 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 SLC11A2P49281 568 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 DPYSL3Q14195 570 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 TAZQ16635 292 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 TFDP3Q5H9I0 405 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 STXBP5Q5T5C0 1151 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 MFSD7Q6UXD7 560 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 SPOCD1Q6ZMY3 1216 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 EP400NLQ6ZTU2 488 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 KIAA1958Q8N8K9 716 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 ITFG1Q8TB96 612 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 ACTRT1Q8TDG2 376 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 COG1Q8WTW3 980 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 RNF25Q96BH1 459 aaPredicted RBP11.12□□□□□ -0.63
SS18-213ENST00000579640 ACSF2Q96CM8 615 aaPredicted RBP11.12□□□□□ -0.63
SS18-213ENST00000579640 KCTD15Q96SI1 283 aaPredicted RBP11.12□□□□□ -0.63
SS18-213ENST00000579640 EPAS1Q99814 870 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 DDX50Q9BQ39 737 aaKnown RBP11.12□□□□□ -0.63
SS18-213ENST00000579640 APOL5Q9BWW9 433 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 KIF9Q9HAQ2 790 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 ANLNQ9NQW6 1124 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 KLHL11Q9NVR0 708 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 GPATCH2LQ9NWQ4 482 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 MTMR10Q9NXD2 777 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 HELZP42694 1942 aaKnown RBP11.12□□□□□ -0.63
SS18-213ENST00000579640 C3orf70A6NLC5 250 aaPredicted RBP11.12□□□□□ -0.63
SS18-213ENST00000579640 PI4K2BG5E9Z4 385 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 I6L893 689 aaPredicted RBP11.12□□□□□ -0.63
SS18-213ENST00000579640 PGRMC1O00264 195 aaKnown RBP11.12□□□□□ -0.63
SS18-213ENST00000579640 ACSL4O60488 711 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 SRGAP2O75044 1071 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 MOCS2O96007 188 aaPredicted RBP11.12□□□□□ -0.63
SS18-213ENST00000579640 CORO1AP31146 461 aaKnown RBP11.12□□□□□ -0.63
SS18-213ENST00000579640 CDKN2BP42772 138 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 PAFAH1B1P43034 410 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 HCAR3P49019 387 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 KCNQ1P51787 676 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 MLLT6P55198 1093 aaPredicted RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms