RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 RING1Q06587 406 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 DMWDQ09019 674 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 NME3Q13232 169 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 ZC3H12AQ5D1E8 599 aaKnown RBP20.26■□□□□ 0.83
SS18-209ENST00000578595 EMC10Q5UCC4 262 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 FYB2Q5VWT5 728 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 RFWD3Q6PCD5 774 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 TRIM72Q6ZMU5 477 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 MAMSTRQ6ZN01 415 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 MMS22LQ6ZRQ5 1243 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 BEND5Q7L4P6 421 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 SLC26A9Q7LBE3 791 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 TXNDC5Q8NBS9 432 aaKnown RBP20.26■□□□□ 0.83
SS18-209ENST00000578595 TMA16Q96EY4 203 aaKnown RBP20.26■□□□□ 0.83
SS18-209ENST00000578595 FCRL2Q96LA5 508 aaPredicted RBP20.26■□□□□ 0.83
SS18-209ENST00000578595 DDX50Q9BQ39 737 aaKnown RBP20.26■□□□□ 0.83
SS18-209ENST00000578595 HINFPQ9BQA5 517 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 C11orf70Q9BRQ4 267 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 TSPY26PQ9H489 355 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 GOLGA6L7A0A1B0GV03 622 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 K7ESF4 209 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 PENKP01210 267 aaPredicted RBP20.25■□□□□ 0.83
SS18-209ENST00000578595 HOXC13P31276 330 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 WASP42768 502 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 TNFRSF4P43489 277 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 NSFP46459 744 aaKnown RBP20.25■□□□□ 0.83
SS18-209ENST00000578595 SULT1E1P49888 294 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 UBASH3AP57075 661 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 ZNF445P59923 1031 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 NNTQ13423 1086 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 SYT13Q7L8C5 426 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 CHSY1Q86X52 802 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 PHTF2Q8N3S3 785 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 TSTD1Q8NFU3 115 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 SLC2A13Q96QE2 648 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.25■□□□□ 0.83
SS18-209ENST00000578595 STIM2Q9P246 746 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 SLC12A6Q9UHW9 1150 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 STAP1Q9ULZ2 295 aa20.25■□□□□ 0.83
SS18-209ENST00000578595 A0A1W2PQC6 194 aa20.24■□□□□ 0.83
SS18-209ENST00000578595 LRRC53A6NM62 1247 aa20.24■□□□□ 0.83
SS18-209ENST00000578595 GFRA3O60609 400 aa20.24■□□□□ 0.83
SS18-209ENST00000578595 TBL1XO60907 577 aa20.24■□□□□ 0.83
SS18-209ENST00000578595 PAPSS2O95340 614 aaPredicted RBP20.24■□□□□ 0.83
SS18-209ENST00000578595 CHRNB2P17787 502 aa20.24■□□□□ 0.83
SS18-209ENST00000578595 ABCB4P21439 1286 aa20.24■□□□□ 0.83
SS18-209ENST00000578595 ASIC2Q16515 512 aa20.24■□□□□ 0.83
SS18-209ENST00000578595 EOGTQ5NDL2 527 aa20.24■□□□□ 0.83
SS18-209ENST00000578595 PRR23BQ6ZRT6 265 aa20.24■□□□□ 0.83
SS18-209ENST00000578595 TRMT11Q7Z4G4 463 aaKnown RBP20.24■□□□□ 0.83
SS18-209ENST00000578595 PHLDB2Q86SQ0 1253 aa20.24■□□□□ 0.83
SS18-209ENST00000578595 XYLT1Q86Y38 959 aa20.24■□□□□ 0.83
SS18-209ENST00000578595 CCDC117Q8IWD4 279 aaPredicted RBP20.24■□□□□ 0.83
SS18-209ENST00000578595 FAM217AQ8IXS0 508 aa20.24■□□□□ 0.83
SS18-209ENST00000578595 ATP6V0D2Q8N8Y2 350 aa20.24■□□□□ 0.83
SS18-209ENST00000578595 SLC30A5Q8TAD4 765 aa20.24■□□□□ 0.83
SS18-209ENST00000578595 METTL5Q9NRN9 209 aaKnown RBP20.24■□□□□ 0.83
SS18-209ENST00000578595 MMP17Q9ULZ9 603 aa20.24■□□□□ 0.83
SS18-209ENST00000578595 M0QYT0 321 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 APBB3O95704 486 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 TDGF1P13385 188 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 NOS2P35228 1153 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 EGFLAMQ63HQ2 1017 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 RAP1GAP2Q684P5 730 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 SDE2Q6IQ49 451 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 CEP68Q76N32 757 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 SND1Q7KZF4 910 aaKnown RBP eCLIP20.23■□□□□ 0.83
SS18-209ENST00000578595 ANKS1BQ7Z6G8 1248 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 LONP2Q86WA8 852 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 CHPFQ8IZ52 775 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 IL17RCQ8NAC3 791 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 HJURPQ8NCD3 748 aaPredicted RBP20.23■□□□□ 0.83
SS18-209ENST00000578595 UCMAQ8WVF2 138 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 ERLEC1Q96DZ1 483 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 AGPAT1Q99943 283 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 CIPCQ9C0C6 399 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 NUCKS1Q9H1E3 243 aaKnown RBP20.23■□□□□ 0.83
SS18-209ENST00000578595 IFNKQ9P0W0 207 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 BCCIPQ9P287 314 aaKnown RBP eCLIP20.23■□□□□ 0.83
SS18-209ENST00000578595 RAB23Q9ULC3 237 aa20.23■□□□□ 0.83
SS18-209ENST00000578595 PTPRZ1P23471 2315 aaPredicted RBP20.22■□□□□ 0.83
SS18-209ENST00000578595 PRR23AA6NEV1 266 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 SGK1O00141 431 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 LMNAP02545 664 aaKnown RBP20.22■□□□□ 0.83
SS18-209ENST00000578595 CYP1A1P04798 512 aaPredicted RBP20.22■□□□□ 0.83
SS18-209ENST00000578595 SLC2A3P11169 496 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 HOXD9P28356 352 aaPredicted RBP20.22■□□□□ 0.83
SS18-209ENST00000578595 SLC6A4P31645 630 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 CCR1P32246 355 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 MATKP42679 507 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 KIR2DL1P43626 348 aaPredicted RBP20.22■□□□□ 0.83
SS18-209ENST00000578595 SGSHP51688 502 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 DGKEP52429 567 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 FAM133BQ5BKY9 247 aaKnown RBP20.22■□□□□ 0.83
SS18-209ENST00000578595 SFMBT2Q5VUG0 894 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 NADSYN1Q6IA69 706 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 ANO7Q6IWH7 933 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 LGI2Q8N0V4 545 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 PGBD3Q8N328 593 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 CARNMT1Q8N4J0 409 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms