RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	NR4A2	P43354	598 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	CRKL	P46109	303 aa	Known RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	LMAN1	P49257	510 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	STX17	P56962	302 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	AKAP17A	Q02040	695 aa	Known RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	UBE4A	Q14139	1066 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	GRM4	Q14833	912 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	UBXN2B	Q14CS0	331 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	IL17A	Q16552	155 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	TMEM119	Q4V9L6	283 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	ZBTB41	Q5SVQ8	909 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	IFIT1B	Q5T764	474 aa	Known RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	SUSD4	Q5VX71	490 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	RRAGB	Q5VZM2	374 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	NCAPH2	Q6IBW4	605 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	GALNT17	Q6IS24	598 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	KLHL10	Q6JEL2	608 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	CNNM4	Q6P4Q7	775 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	VWA1	Q6PCB0	445 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	CTR9	Q6PD62	1173 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	WDR59	Q6PJI9	974 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	DLK2	Q6UY11	383 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	ZNF782	Q6ZMW2	699 aa	Predicted RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	YTHDF3	Q7Z739	585 aa	Known RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	CATIP	Q7Z7H3	387 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	IQCA1	Q86XH1	822 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	CCDC170	Q8IYT3	715 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	BLID	Q8IZY5	108 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	MMGT1	Q8N4V1	131 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	SRBD1	Q8N5C6	995 aa	Known RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	MIGA1	Q8NAN2	632 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	ANKRD20A12P	Q8NF67	263 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	CCDC148	Q8NFR7	591 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	OR8K1	Q8NGG5	319 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	OR14C36	Q8NHC7	312 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	LRRC15	Q8TF66	581 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	AEN	Q8WTP8	325 aa	Known RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	COG1	Q8WTW3	980 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	NUP133	Q8WUM0	1156 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	SDR42E1	Q8WUS8	393 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	ZNF480	Q8WV37	535 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	NELFB	Q8WX92	580 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	AK8	Q96MA6	479 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	EIF3C	Q99613	913 aa	Known RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	SPZ1	Q9BXG8	430 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	TSGA10	Q9BZW7	698 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	PDE11A	Q9HCR9	933 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	LZTFL1	Q9NQ48	299 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	MTMR4	Q9NYA4	1195 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	TAB2	Q9NYJ8	693 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	FAM30A	Q9NZY2	134 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	EVL	Q9UI08	416 aa	Predicted RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	MYO6	Q9UM54	1294 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	CAPN11	Q9UMQ6	739 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	GDA	Q9Y2T3	454 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	RRP15	Q9Y3B9	282 aa	Known RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	ARID2	Q68CP9	1835 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	GRIN2D	O15399	1336 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	LTBP4	Q8N2S1	1624 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	CYP2D7	A0A087X1C5	515 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	ESYT2	A0FGR8	921 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	BICDL2	A1A5D9	508 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	TRIM49B	A6NDI0	452 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	GCOM1	H8Y6P7	765 aa	Predicted RBP	2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	hCG_1984214	I3L0E3	225 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	SMIM22	K7EJ46	135 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	AGPS	O00116	658 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	PLD2	O14939	933 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	ZNF263	O14978	683 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	ADAMTS3	O15072	1205 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	ZEB2	O60315	1214 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	N4BP1	O75113	896 aa	Known RBP	2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	ATP1A1	P05023	1023 aa	Known RBP	2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	RHOXF2B	P0C7M4	288 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	MYBL2	P10244	700 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	PRLR	P16471	622 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	KIF5B	P33176	963 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	CYLC1	P35663	651 aa	Predicted RBP	2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	STAT6	P42226	847 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	MAGEA9	P43362	315 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	MMP13	P45452	471 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	NOV	P48745	357 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	GNAQ	P50148	359 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	DYNLL1	P63167	89 aa	Known RBP	2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	KRT83	P78385	493 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	ZBED6	P86452	979 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	TFF2	Q03403	129 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	STIM1	Q13586	685 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	PTPRR	Q15256	657 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	SLC35G1	Q2M3R5	365 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	KIAA1161	Q6NSJ0	714 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	CLEC4G	Q6UXB4	293 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	LRRC31	Q6UY01	552 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	LEKR1	Q6ZMV7	388 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	GBP6	Q6ZN66	633 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	PIK3AP1	Q6ZUJ8	805 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	DGKH	Q86XP1	1220 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	FAM114A1	Q8IWE2	563 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	AMOTL1	Q8IY63	956 aa		2.69	□□□□□ -1.98
SPG11-223	ENST00000560858	ZNF713	Q8N859	430 aa	Predicted RBP	2.69	□□□□□ -1.98

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