RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 TMA16Q96EY4 203 aaKnown RBP11.11□□□□□ -0.63
LINC00239-201ENST00000556973 BTN2A3PQ96KV6 586 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 FAM126AQ9BYI3 521 aaPredicted RBP11.11□□□□□ -0.63
LINC00239-201ENST00000556973 SLC2A11Q9BYW1 496 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 XPO4Q9C0E2 1151 aaKnown RBP11.11□□□□□ -0.63
LINC00239-201ENST00000556973 PRMT8Q9NR22 394 aaPredicted RBP11.11□□□□□ -0.63
LINC00239-201ENST00000556973 SEPT11Q9NVA2 429 aaKnown RBP11.11□□□□□ -0.63
LINC00239-201ENST00000556973 DNAJC17Q9NVM6 304 aaKnown RBP11.11□□□□□ -0.63
LINC00239-201ENST00000556973 DDIT4Q9NX09 232 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 STAP1Q9ULZ2 295 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 CAPN11Q9UMQ6 739 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 STARD13Q9Y3M8 1113 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.11□□□□□ -0.63
LINC00239-201ENST00000556973 KCNU1A8MYU2 1149 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 M0QYT0 321 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 GFRA2O00451 464 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 APOEP02649 317 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 CISD3P0C7P0 127 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 ABCB4P21439 1286 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 PRKCIP41743 596 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 ZBED6P86452 979 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 SATB1Q01826 763 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 SLC25A52Q3SY17 297 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 HSF5Q4G112 596 aaPredicted RBP11.1□□□□□ -0.63
LINC00239-201ENST00000556973 C2CD6Q53TS8 623 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 ZC3H12AQ5D1E8 599 aaKnown RBP11.1□□□□□ -0.63
LINC00239-201ENST00000556973 MPP7Q5T2T1 576 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 PIK3R6Q5UE93 754 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 GRAMD4Q6IC98 578 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 ACAD10Q6JQN1 1059 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 MMS22LQ6ZRQ5 1243 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 SYT13Q7L8C5 426 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 TERB1Q8NA31 727 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 RNF214Q8ND24 703 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 RPLP0P6Q8NHW5 317 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 USP33Q8TEY7 942 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 CPLX3Q8WVH0 158 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 SYN2Q92777 582 aaPredicted RBP11.1□□□□□ -0.63
LINC00239-201ENST00000556973 BHMTQ93088 406 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 RNF34Q969K3 372 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 FAM122AQ96E09 287 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 PGAP3Q96FM1 320 aaPredicted RBP11.1□□□□□ -0.63
LINC00239-201ENST00000556973 NPY6RQ99463 290 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 HAUS4Q9H6D7 363 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 FAM204AQ9H8W3 233 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 PLK2Q9NYY3 685 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 ADAM22Q9P0K1 906 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 TMEM59LQ9UK28 342 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 SLC8A2Q9UPR5 921 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 SLC27A6Q9Y2P4 619 aa11.1□□□□□ -0.63
LINC00239-201ENST00000556973 BZW2Q9Y6E2 419 aaKnown RBP11.1□□□□□ -0.63
LINC00239-201ENST00000556973 ITIH6Q6UXX5 1313 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 SYNJ2BP-COX16A0A087WUM0 186 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 GOLGA6L7A0A1B0GV03 622 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 GOLGA8SH3BPF8 625 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 TRIM24O15164 1050 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 TSPAN3O60637 253 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 CALB1P05937 261 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 HOXA6P31267 233 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 SLC6A4P31645 630 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 KIR2DL1P43626 348 aaPredicted RBP11.09□□□□□ -0.63
LINC00239-201ENST00000556973 SEC13P55735 322 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 GSCP56915 257 aaPredicted RBP11.09□□□□□ -0.63
LINC00239-201ENST00000556973 PITX1P78337 314 aaPredicted RBP11.09□□□□□ -0.63
LINC00239-201ENST00000556973 KDSRQ06136 332 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 C1QBPQ07021 282 aaKnown RBP11.09□□□□□ -0.63
LINC00239-201ENST00000556973 KLHL30Q0D2K2 578 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 MESP2Q0VG99 397 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 PTP4A2Q12974 167 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 NME3Q13232 169 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 C2orf27AQ580R0 203 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 FAM133BQ5BKY9 247 aaKnown RBP11.09□□□□□ -0.63
LINC00239-201ENST00000556973 PKN3Q6P5Z2 889 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 TSSK4Q6SA08 328 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 SND1Q7KZF4 910 aaKnown RBP eCLIP11.09□□□□□ -0.63
LINC00239-201ENST00000556973 CAMKK1Q8N5S9 505 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 ZNF557Q8N988 423 aaPredicted RBP11.09□□□□□ -0.63
LINC00239-201ENST00000556973 NELL1Q92832 810 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 ACDQ96AP0 544 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 P2RY11Q96G91 374 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 VCPIP1Q96JH7 1222 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 C11orf70Q9BRQ4 267 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 SYT11Q9BT88 431 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 WDCPQ9H6R7 721 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 COX16Q9P0S2 106 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 LUC7L2Q9Y383 392 aaKnown RBP11.09□□□□□ -0.63
LINC00239-201ENST00000556973 PAXBP1Q9Y5B6 917 aa11.09□□□□□ -0.63
LINC00239-201ENST00000556973 ATG2BQ96BY7 2078 aa11.08□□□□□ -0.63
LINC00239-201ENST00000556973 WDFY4Q6ZS81 3184 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 FAM170AA1A519 330 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 TYW5A2RUC4 315 aaKnown RBP11.08□□□□□ -0.64
LINC00239-201ENST00000556973 SIGLEC16A6NMB1 481 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 K7ESF4 209 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 TIMM44O43615 452 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 ENDOD1O94919 500 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 MOCS2O96007 188 aaPredicted RBP11.08□□□□□ -0.64
LINC00239-201ENST00000556973 KRT3P12035 628 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 GZMAP12544 262 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 HOXD9P28356 352 aaPredicted RBP11.08□□□□□ -0.64
LINC00239-201ENST00000556973 TIE1P35590 1138 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms