RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 UNC45BQ8IWX7 931 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 FAM160A2Q8N612 972 aaPredicted RBP10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 ZNF513Q8N8E2 541 aaPredicted RBP10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 C1orf131Q8NDD1 294 aaKnown RBP10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 MDGA1Q8NFP4 955 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 ADAM32Q8TC27 787 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 GOLGA1Q92805 767 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 AZIN2Q96A70 460 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 FAM149B1Q96BN6 582 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 ZC3H10Q96K80 434 aaKnown RBP10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 FCRL2Q96LA5 508 aaPredicted RBP10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 STK33Q9BYT3 514 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 SLC2A11Q9BYW1 496 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 CD248Q9HCU0 757 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 PARD6AQ9NPB6 346 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 ASNSD1Q9NWL6 643 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 SIK3Q9Y2K2 1263 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 LGALS16A8MUM7 142 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 F8VZ95 297 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 DCLK1O15075 740 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 ACSL4O60488 711 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 TSPAN3O60637 253 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 ERBB2P04626 1255 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 CYBBP04839 570 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 GLI1P08151 1106 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 NTSR1P30989 418 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 SLC6A4P31645 630 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 CDH5P33151 784 aaPredicted RBP10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 KRT9P35527 623 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 WASP42768 502 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 SGSHP51688 502 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 ZNF445P59923 1031 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 PITX1P78337 314 aaPredicted RBP10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 PLK5Q496M5 336 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 PTPN20Q4JDL3 420 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 FAM133BQ5BKY9 247 aaKnown RBP10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 NUGGCQ68CJ6 796 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 OLFML1Q6UWY5 402 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 CEP68Q76N32 757 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 CACNA2D4Q7Z3S7 1137 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 TRMT11Q7Z4G4 463 aaKnown RBP10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 KIAA2013Q8IYS2 634 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 OLIG1Q8TAK6 271 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 DDI1Q8WTU0 396 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 SLC39A7Q92504 469 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 TMA16Q96EY4 203 aaKnown RBP10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 MYEOVQ96EZ4 313 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 SERPINB11Q96P15 392 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 SLC2A13Q96QE2 648 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 GABRG3Q99928 467 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 HINFPQ9BQA5 517 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 TRIM62Q9BVG3 475 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 POPDC2Q9HBU9 364 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 GMEB2Q9UKD1 530 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 RAB23Q9ULC3 237 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 TLR6Q9Y2C9 796 aa10.69□□□□□ -0.7
CCDC88C-206ENST00000553437 MYO16Q9Y6X6 1858 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 IRAK2O43187 625 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 ALDH1A2O94788 518 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 TRUB2O95900 331 aaKnown RBP10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 C7P10643 843 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 SLC11A2P49281 568 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 JAM2P57087 298 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 ENPP2Q13822 863 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 EFHC1Q5JVL4 640 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 FKBP15Q5T1M5 1219 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 MPP7Q5T2T1 576 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 PIK3R6Q5UE93 754 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 TMEM215Q68D42 235 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 KIAA1211LQ6NV74 962 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 RFWD3Q6PCD5 774 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 FAM183BPQ6ZVS7 135 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 KIAA0907Q7Z7F0 614 aaPredicted RBP10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 NOP9Q86U38 636 aaKnown RBP10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 DEFB106AQ8N104 65 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 LOXL4Q96JB6 756 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 NOX5Q96PH1 765 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 FUCA2Q9BTY2 467 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 IRX2Q9BZI1 471 aaPredicted RBP10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 TPSD1Q9BZJ3 242 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 DUSP15Q9H1R2 295 aaPredicted RBP10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 POLMQ9NP87 494 aaPredicted RBP10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 FAM207AQ9NSI2 230 aaPredicted RBP10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 CACNA2D2Q9NY47 1150 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 THAP10Q9P2Z0 257 aaPredicted RBP10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 XPO7Q9UIA9 1087 aaKnown RBP10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 NOCTQ9UK39 431 aaKnown RBP10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 INVSQ9Y283 1065 aa10.68□□□□□ -0.7
CCDC88C-206ENST00000553437 ACACBO00763 2458 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 PKD1L2Q7Z442 2459 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 MYH10P35580 1976 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 TCRBV21S2A2A0A5A6 115 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 WASH3PC4AMC7 463 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 CAPN9O14815 690 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 HSF2BPO75031 334 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 LRP3O75074 770 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 GRAP2O75791 330 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 EPN2O95208 641 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 TPM2P07951 284 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms