RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ARHGEF2Q92974 986 aaKnown RBP27.22■■□□□ 1.95
CCDC88C-205ENST00000553403 WDCPQ9H6R7 721 aa27.22■■□□□ 1.95
CCDC88C-205ENST00000553403 ADAM28Q9UKQ2 775 aa27.22■■□□□ 1.95
CCDC88C-205ENST00000553403 MFHAS1Q9Y4C4 1052 aa27.22■■□□□ 1.95
CCDC88C-205ENST00000553403 EXOC1LA0A1B0GW35 172 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 PARNO95453 639 aaKnown RBP27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 MRPL58Q14197 206 aaKnown RBP27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 PDK1Q15118 436 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 RASA2Q15283 850 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 VARS2Q5ST30 1063 aaKnown RBP27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 VSTM1Q6UX27 236 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 TAC4Q86UU9 113 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 ANKMY2Q8IV38 441 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 MCUQ8NE86 351 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 CCDC110Q8TBZ0 833 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 DQX1Q8TE96 717 aaKnown RBP27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 ABCC13Q9NSE7 274 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 FETUBQ9UGM5 382 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 CLUHO75153 1309 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 HTTP42858 3142 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 IGLV3-25P01717 112 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 OR4Q2P0C623 313 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 GPX6P59796 221 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 YWHAGP61981 247 aaKnown RBP eCLIP27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 PRKD1Q15139 912 aaPredicted RBP27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 BBS9Q3SYG4 887 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 HP1BP3Q5SSJ5 553 aaPredicted RBP27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 VPS52Q8N1B4 723 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 SCAMP5Q8TAC9 235 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 HTR3CQ8WXA8 447 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 C8orf48Q96LL4 319 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 SELENOSQ9BQE4 189 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 FERMT1Q9BQL6 677 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 ETNK1Q9HBU6 452 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 ANLNQ9NQW6 1124 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 TMEM51Q9NW97 253 aa27.21■■□□□ 1.95
CCDC88C-205ENST00000553403 OR6C75A6NL08 312 aa27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 PPP1R12AO14974 1030 aaPredicted RBP27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 BANF1O75531 89 aa27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 ALDH2P05091 517 aa27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 CYP2C18P33260 490 aa27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 GLUD2P49448 558 aa27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 TPI1P60174 286 aa27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 NR1H3Q13133 447 aa27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 CCDC38Q502W7 563 aa27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 NPAS4Q8IUM7 802 aa27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 FBXO36Q8NEA4 188 aa27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 BCAS4Q8TDM0 211 aa27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 WDR83Q9BRX9 315 aaKnown RBP27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 TMEM175Q9BSA9 504 aa27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 MRPL9Q9BYD2 267 aaKnown RBP27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 CTNNAL1Q9UBT7 734 aa27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 SLC24A2Q9UI40 661 aa27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 ACTL7BQ9Y614 415 aa27.2■■□□□ 1.94
CCDC88C-205ENST00000553403 I6L893 689 aaPredicted RBP27.19■■□□□ 1.94
CCDC88C-205ENST00000553403 CXCL10P02778 98 aa27.19■■□□□ 1.94
CCDC88C-205ENST00000553403 VAV1P15498 845 aa27.19■■□□□ 1.94
CCDC88C-205ENST00000553403 TPSB2P20231 275 aa27.19■■□□□ 1.94
CCDC88C-205ENST00000553403 MAGEA11P43364 429 aa27.19■■□□□ 1.94
CCDC88C-205ENST00000553403 EIF4EBP2Q13542 120 aaPredicted RBP27.19■■□□□ 1.94
CCDC88C-205ENST00000553403 MTFR1Q15390 333 aa27.19■■□□□ 1.94
CCDC88C-205ENST00000553403 TPSAB1Q15661 275 aa27.19■■□□□ 1.94
CCDC88C-205ENST00000553403 TADA2BQ86TJ2 420 aa27.19■■□□□ 1.94
CCDC88C-205ENST00000553403 CRIPAKQ8N1N5 446 aa27.19■■□□□ 1.94
CCDC88C-205ENST00000553403 EPAS1Q99814 870 aa27.19■■□□□ 1.94
CCDC88C-205ENST00000553403 ABI2Q9NYB9 513 aaPredicted RBP27.19■■□□□ 1.94
CCDC88C-205ENST00000553403 PCDHB5Q9Y5E4 795 aa27.19■■□□□ 1.94
CCDC88C-205ENST00000553403 FAM72CH0Y354 149 aa27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 TRIM66O15016 1216 aa27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 PQBP1O60828 265 aaKnown RBP27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 STK10O94804 968 aaKnown RBP27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 CCL5P13501 91 aa27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 ATP2A2P16615 1042 aaKnown RBP27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 ERCC2P18074 760 aa27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 FGFR3P22607 806 aa27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 GCAP28676 217 aa27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 FAM72AQ5TYM5 149 aa27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 BTBD8Q5XKL5 378 aa27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 FAM72DQ6L9T8 149 aa27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 ZNF280DQ6N043 979 aa27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 ANKRD33Q7Z3H0 272 aa27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 FAM72BQ86X60 149 aa27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 PALM2Q8IXS6 379 aa27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 TKTL2Q9H0I9 626 aa27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 OSBPL2Q9H1P3 480 aa27.18■■□□□ 1.94
CCDC88C-205ENST00000553403 A0A0A0MRY4 1105 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 CHN1P15882 459 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 FDFT1P37268 417 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 TCTN1Q2MV58 587 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 CTXN3Q4LDR2 81 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 BRMS1LQ5PSV4 323 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 FAM171A1Q5VUB5 890 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 ARHGEF18Q6ZSZ5 1173 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 SCN4BQ8IWT1 228 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 MDM1Q8TC05 714 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 LRRN4Q8WUT4 740 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 MAML1Q92585 1016 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 SPATA13Q96N96 652 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 MARCH5Q9NX47 278 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 RABGEF1Q9UJ41 708 aa27.17■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms