RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 NCLNQ969V3 563 aa13.5□□□□□ -0.25
TCOF1-213ENST00000514442 MRPL42Q9Y6G3 142 aaKnown RBP13.5□□□□□ -0.25
TCOF1-213ENST00000514442 TRIM49D1C9J1S8 452 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 CFAP99D6REC4 459 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 SPATA31C1P0DKV0 1188 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 GLRA2P23416 452 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 PTGER2P43116 358 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 SERPINB9P50453 376 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 FOLH1Q04609 750 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 MORF4L2Q15014 288 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 LRRC55Q6ZSA7 311 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 SZRD1Q7Z422 152 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 TNFRSF25Q93038 417 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 ZNF518BQ9C0D4 1074 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 TASP1Q9H6P5 420 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 GPAMQ9HCL2 828 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 ARL8BQ9NVJ2 186 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 KIAA1257Q9ULG3 409 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 MYRFQ9Y2G1 1151 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 NALCNQ8IZF0 1738 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 ABCC6O95255 1503 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 PEX10O60683 326 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 HARS2P49590 506 aaKnown RBP13.49□□□□□ -0.25
TCOF1-213ENST00000514442 KCTD19Q17RG1 926 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-213ENST00000514442 PCSK9Q8NBP7 692 aaKnown RBP13.49□□□□□ -0.25
TCOF1-213ENST00000514442 DACH2Q96NX9 599 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 RPRD1AQ96P16 312 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-213ENST00000514442 PLEKHG4BQ96PX9 1271 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 COLEC11Q9BWP8 271 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 DCLK3Q9C098 648 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 PHACTR1Q9C0D0 580 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 CCDC90BQ9GZT6 254 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 PORCNQ9H237 461 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 IKZF4Q9H2S9 585 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 DDX43Q9NXZ2 648 aaKnown RBP13.49□□□□□ -0.25
TCOF1-213ENST00000514442 KCNK4Q9NYG8 393 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 ITGA11Q9UKX5 1188 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 AP4E1Q9UPM8 1137 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 AURKCQ9UQB9 309 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 BCL9LQ86UU0 1499 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 NRXN3Q9Y4C0 1643 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 MANSC4A6NHS7 340 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-213ENST00000514442 TLR2O60603 784 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 POLBP06746 335 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 PRKCIP41743 596 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 MAPRE1Q15691 268 aaKnown RBP13.49□□□□□ -0.25
TCOF1-213ENST00000514442 CTXN3Q4LDR2 81 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 CELF3Q5SZQ8 465 aaKnown RBP13.49□□□□□ -0.25
TCOF1-213ENST00000514442 SLC27A1Q6PCB7 646 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 ISLR2Q6UXK2 745 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 CLNKQ7Z7G1 428 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 FAM84AQ96KN4 292 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 PENKP01210 267 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-213ENST00000514442 INPP5AQ14642 412 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 TMEM63BQ5T3F8 832 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 OTOAQ7RTW8 1153 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 SLFN11Q7Z7L1 901 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 SNX19Q92543 992 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 FBXO32Q969P5 355 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 TMEM79Q9BSE2 394 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 ETNK2Q9NVF9 386 aa13.49□□□□□ -0.25
TCOF1-213ENST00000514442 TRIM43BA6NCK2 446 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 C16orf96A6NNT2 1141 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 H0YGN5 161 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 LSM8O95777 96 aaKnown RBP13.48□□□□□ -0.25
TCOF1-213ENST00000514442 TCN1P20061 433 aaPredicted RBP13.48□□□□□ -0.25
TCOF1-213ENST00000514442 PSEN2P49810 448 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 TKTL1P51854 596 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 TCHHL1Q5QJ38 904 aaPredicted RBP13.48□□□□□ -0.25
TCOF1-213ENST00000514442 HGSNATQ68CP4 663 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 EDEM1Q92611 657 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 TMEM169Q96HH4 297 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 VPS50Q96JG6 964 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 MTG1Q9BT17 334 aaPredicted RBP13.48□□□□□ -0.25
TCOF1-213ENST00000514442 CYP3A43Q9HB55 503 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 PPME1Q9Y570 386 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 NFS1Q9Y697 457 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 C15orf38-AP3S2A0A0A6YYH1 394 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 ASMTLO95671 621 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 GJB1P08034 283 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 CCNG2Q16589 344 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 ZPBP2Q6X784 338 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 BNC2Q6ZN30 1099 aaPredicted RBP13.48□□□□□ -0.25
TCOF1-213ENST00000514442 ARPINQ7Z6K5 226 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 ULK2Q8IYT8 1036 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 CNPY3Q9BT09 278 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 TAS2R14Q9NYV8 317 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 BARX2Q9UMQ3 279 aaPredicted RBP13.48□□□□□ -0.25
TCOF1-213ENST00000514442 NCANO14594 1321 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 ALDH1A1P00352 501 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 ACAP1Q15027 740 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 SKIV2LQ15477 1246 aaKnown RBP13.48□□□□□ -0.25
TCOF1-213ENST00000514442 RGS21Q2M5E4 152 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 AADACL2Q6P093 401 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 SATL1Q86VE3 508 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 PRELID2Q8N945 189 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 FBXO36Q8NEA4 188 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 APOL2Q9BQE5 337 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 DNAJC18Q9H819 358 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 XPNPEP3Q9NQH7 507 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms