RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 ATG7O95352 703 aa17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 TRUB2O95900 331 aaKnown RBP17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 ZNF23P17027 643 aa17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 HARS2P49590 506 aaKnown RBP17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 CDK9P50750 372 aaKnown RBP17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 MRPS22P82650 360 aaKnown RBP17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 ZNF394Q53GI3 561 aa17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 FSCBQ5H9T9 825 aa17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 FAXCQ5TGI0 409 aa17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 Q6ZNX1 250 aa17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 EMC1Q8N766 993 aa17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 SMYD1Q8NB12 490 aa17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 MCUQ8NE86 351 aa17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 MCPH1Q8NEM0 835 aa17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 BIRC8Q96P09 236 aa17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 TCEAL9Q9UHQ7 104 aa17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 ZNHIT2Q9UHR6 403 aa17.61■□□□□ 0.41
SQSTM1-211ENST00000506690 H7C0C1 242 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 STBD1O95210 358 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 PRKCGP05129 697 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 APRTP07741 180 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 POLR2BP30876 1174 aaKnown RBP17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 ABCD1P33897 745 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 ATP5OP48047 213 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 C10orf107Q8IVU9 208 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 CLEC4DQ8WXI8 215 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 SERPINI1Q99574 410 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 EBNA1BP2Q99848 306 aaKnown RBP17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 KLC2Q9H0B6 622 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 CISHQ9NSE2 258 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 HERC5Q9UII4 1024 aaKnown RBP17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 PACSIN3Q9UKS6 424 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 SH3PXD2BA1X283 911 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 KCNN4O15554 427 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 CST3P01034 146 aaPredicted RBP17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 ALDOAP04075 364 aaKnown RBP17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 ABCE1P61221 599 aaKnown RBP17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 ZNF534Q76KX8 674 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 DEPDC1BQ8WUY9 529 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 ZBTB45Q96K62 511 aaPredicted RBP17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 COPS7BQ9H9Q2 264 aaPredicted RBP17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 ARHGEF38Q9NXL2 777 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 MOCS1Q9NZB8 636 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 CYTH4Q9UIA0 394 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 VPS28Q9UK41 221 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 CCPG1Q9ULG6 757 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 USP18Q9UMW8 372 aa17.6■□□□□ 0.41
SQSTM1-211ENST00000506690 DGAT1O75907 488 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 ICAM1P05362 532 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 THRAP10827 490 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 ALDH3B2P48448 385 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 NUMBP49757 651 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 PHEXP78562 749 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 GHRHRQ02643 423 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 PDE1CQ14123 709 aaPredicted RBP17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 FLOT2Q14254 428 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 ZNF423Q2M1K9 1284 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 DENND1BQ6P3S1 775 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 POTEHQ6S545 545 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 CNOT11Q9UKZ1 510 aaKnown RBP17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 PCDHA11Q9Y5I1 949 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 A0A1B0GTW7 788 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 PRSS51A0A1B0GVH4 220 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 ENTPD3O75355 529 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 PSMC1P62191 440 aaKnown RBP17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 PIGGQ5H8A4 983 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 FAM47CQ5HY64 1035 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 EPGNQ6UW88 154 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 CYS1Q717R9 158 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 MPP5Q8N3R9 675 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 SLC4A11Q8NBS3 891 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 TSPAN14Q8NG11 270 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 RSPH1Q8WYR4 309 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 LENG8Q96PV6 779 aaPredicted RBP17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 CSRNP1Q96S65 589 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 HAUS8Q9BT25 410 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 DCDC2Q9UHG0 476 aa17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 PAIP2BQ9ULR5 123 aaKnown RBP17.59■□□□□ 0.41
SQSTM1-211ENST00000506690 SUPT3HO75486 399 aa17.58■□□□□ 0.41
SQSTM1-211ENST00000506690 LDHAP00338 332 aaKnown RBP17.58■□□□□ 0.41
SQSTM1-211ENST00000506690 THOP1P52888 689 aa17.58■□□□□ 0.41
SQSTM1-211ENST00000506690 TFDP2Q14188 446 aa17.58■□□□□ 0.41
SQSTM1-211ENST00000506690 METTL21CQ5VZV1 264 aa17.58■□□□□ 0.41
SQSTM1-211ENST00000506690 CHERPQ8IWX8 916 aaKnown RBP17.58■□□□□ 0.41
SQSTM1-211ENST00000506690 ZNF513Q8N8E2 541 aaPredicted RBP17.58■□□□□ 0.41
SQSTM1-211ENST00000506690 RDM1Q8NG50 284 aa17.58■□□□□ 0.41
SQSTM1-211ENST00000506690 PEBP4Q96S96 227 aa17.58■□□□□ 0.41
SQSTM1-211ENST00000506690 PKP2Q99959 881 aa17.58■□□□□ 0.41
SQSTM1-211ENST00000506690 POLR3FQ9H1D9 316 aaPredicted RBP17.58■□□□□ 0.41
SQSTM1-211ENST00000506690 COG4Q9H9E3 785 aa17.58■□□□□ 0.41
SQSTM1-211ENST00000506690 FEM1BQ9UK73 627 aa17.58■□□□□ 0.41
SQSTM1-211ENST00000506690 ZNF232Q9UNY5 417 aa17.58■□□□□ 0.41
SQSTM1-211ENST00000506690 PCDHA10Q9Y5I2 948 aa17.58■□□□□ 0.41
SQSTM1-211ENST00000506690 GPR25O00155 361 aa17.58■□□□□ 0.4
SQSTM1-211ENST00000506690 TPP1O14773 563 aa17.58■□□□□ 0.4
SQSTM1-211ENST00000506690 TRPA1O75762 1119 aa17.58■□□□□ 0.4
SQSTM1-211ENST00000506690 PIGRP01833 764 aa17.58■□□□□ 0.4
SQSTM1-211ENST00000506690 XRCC1P18887 633 aaPredicted RBP17.58■□□□□ 0.4
SQSTM1-211ENST00000506690 YWHAEP62258 255 aaKnown RBP17.58■□□□□ 0.4
SQSTM1-211ENST00000506690 ACAP1Q15027 740 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms