RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TPH1P17752 444 aa3.87□□□□□ -1.79
SMC4-220ENST00000488017 SLC7A1P30825 629 aa3.87□□□□□ -1.79
SMC4-220ENST00000488017 DGKQP52824 942 aa3.87□□□□□ -1.79
SMC4-220ENST00000488017 ZNF267Q14586 743 aaPredicted RBP3.87□□□□□ -1.79
SMC4-220ENST00000488017 KRTAP24-1Q3LI83 254 aa3.87□□□□□ -1.79
SMC4-220ENST00000488017 ASPHD1Q5U4P2 390 aa3.87□□□□□ -1.79
SMC4-220ENST00000488017 ARL14EPQ8N8R7 260 aaPredicted RBP3.87□□□□□ -1.79
SMC4-220ENST00000488017 PRR26Q8N8Z3 221 aa3.87□□□□□ -1.79
SMC4-220ENST00000488017 GJA10Q969M2 543 aa3.87□□□□□ -1.79
SMC4-220ENST00000488017 EME1Q96AY2 570 aa3.87□□□□□ -1.79
SMC4-220ENST00000488017 NMD3Q96D46 503 aaKnown RBP3.87□□□□□ -1.79
SMC4-220ENST00000488017 DCLK3Q9C098 648 aa3.87□□□□□ -1.79
SMC4-220ENST00000488017 SIRT3Q9NTG7 399 aaPredicted RBP3.87□□□□□ -1.79
SMC4-220ENST00000488017 HDAC9Q9UKV0 1011 aa3.87□□□□□ -1.79
SMC4-220ENST00000488017 DENND3A2RUS2 1198 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 SMTNL1A8MU46 457 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 WDR47O94967 919 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 SLC3A2P08195 630 aaKnown RBP3.86□□□□□ -1.79
SMC4-220ENST00000488017 HTR7P34969 479 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 ZNF84P51523 738 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 EVA1CP58658 441 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 AMPD3Q01432 767 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 GAD2Q05329 585 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 MTAPQ13126 283 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 PGM5Q15124 567 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 MRGPRG-AS1Q2M3A8 158 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 GLE1Q53GS7 698 aaKnown RBP3.86□□□□□ -1.79
SMC4-220ENST00000488017 PRAMEF19Q5SWL8 479 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 SWSAP1Q6NVH7 229 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 SPSB3Q6PJ21 355 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 PRSS57Q6UWY2 283 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 FAM83HQ6ZRV2 1179 aaPredicted RBP3.86□□□□□ -1.79
SMC4-220ENST00000488017 DDIASQ8IXT1 998 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 AKAP1Q92667 903 aaKnown RBP eCLIP3.86□□□□□ -1.79
SMC4-220ENST00000488017 ELOVL1Q9BW60 279 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 STK31Q9BXU1 1019 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 ATP6V0A4Q9HBG4 840 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 EMSYQ7Z589 1322 aa3.86□□□□□ -1.79
SMC4-220ENST00000488017 A0A0B4J293 547 aa3.85□□□□□ -1.79
SMC4-220ENST00000488017 GAGE12JA6NER3 117 aa3.85□□□□□ -1.79
SMC4-220ENST00000488017 OR6C75A6NL08 312 aa3.85□□□□□ -1.79
SMC4-220ENST00000488017 RAB27BO00194 218 aa3.85□□□□□ -1.79
SMC4-220ENST00000488017 ENO1P06733 434 aaKnown RBP3.85□□□□□ -1.79
SMC4-220ENST00000488017 TXNP10599 105 aaKnown RBP3.85□□□□□ -1.79
SMC4-220ENST00000488017 PF4V1P10720 104 aa3.85□□□□□ -1.79
SMC4-220ENST00000488017 CPA1P15085 419 aa3.85□□□□□ -1.79
SMC4-220ENST00000488017 POU3F1Q03052 451 aaPredicted RBP3.85□□□□□ -1.79
SMC4-220ENST00000488017 Q0VFX4 171 aa3.85□□□□□ -1.79
SMC4-220ENST00000488017 PARM1Q6UWI2 310 aa3.85□□□□□ -1.79
SMC4-220ENST00000488017 YAF2Q8IY57 180 aa3.85□□□□□ -1.79
SMC4-220ENST00000488017 FSTL5Q8N475 847 aaPredicted RBP3.85□□□□□ -1.79
SMC4-220ENST00000488017 C7orf57Q8NEG2 295 aa3.85□□□□□ -1.79
SMC4-220ENST00000488017 MBD3L2Q8NHZ7 208 aaPredicted RBP3.85□□□□□ -1.79
SMC4-220ENST00000488017 ZFPM2Q8WW38 1151 aa3.85□□□□□ -1.79
SMC4-220ENST00000488017 ZNF845Q96IR2 970 aaPredicted RBP3.85□□□□□ -1.79
SMC4-220ENST00000488017 CLMNQ96JQ2 1002 aa3.85□□□□□ -1.79
SMC4-220ENST00000488017 SELENOOQ9BVL4 669 aa3.85□□□□□ -1.79
SMC4-220ENST00000488017 ISCUQ9H1K1 167 aa3.85□□□□□ -1.79
SMC4-220ENST00000488017 UTS2RQ9UKP6 389 aa3.85□□□□□ -1.79
SMC4-220ENST00000488017 G3BP2Q9UN86 482 aaKnown RBP3.85□□□□□ -1.79
SMC4-220ENST00000488017 EVPLQ92817 2033 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 DPPA5A6NC42 116 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 KLKB1P03952 638 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 AKR1A1P14550 325 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 MATN1P21941 496 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 NDUFS1P28331 727 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 SUMO3P55854 103 aaPredicted RBP3.84□□□□□ -1.79
SMC4-220ENST00000488017 POU5F1BQ06416 359 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 KCNJ12Q14500 433 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 ACOX1Q15067 660 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 AASDHQ4L235 1098 aaPredicted RBP3.84□□□□□ -1.79
SMC4-220ENST00000488017 LIPMQ5VYY2 423 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 URB1-AS1Q96HZ7 61 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 AAMDCQ9H7C9 122 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 PLAC1Q9HBJ0 212 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 SACM1LQ9NTJ5 587 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 STK32BQ9NY57 414 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 MID2Q9UJV3 735 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 CAPN11Q9UMQ6 739 aa3.84□□□□□ -1.79
SMC4-220ENST00000488017 ISM1B1AKI9 464 aa3.83□□□□□ -1.8
SMC4-220ENST00000488017 PPP1R3DO95685 299 aa3.83□□□□□ -1.8
SMC4-220ENST00000488017 HOXD3P31249 432 aaPredicted RBP3.83□□□□□ -1.8
SMC4-220ENST00000488017 PCYT1AP49585 367 aa3.83□□□□□ -1.8
SMC4-220ENST00000488017 RASSF2P50749 326 aa3.83□□□□□ -1.8
SMC4-220ENST00000488017 GAB1Q13480 694 aa3.83□□□□□ -1.8
SMC4-220ENST00000488017 FAM76BQ5HYJ3 339 aa3.83□□□□□ -1.8
SMC4-220ENST00000488017 Q5PR19 223 aa3.83□□□□□ -1.8
SMC4-220ENST00000488017 LCE1FQ5T754 118 aa3.83□□□□□ -1.8
SMC4-220ENST00000488017 MANEALQ5VSG8 457 aa3.83□□□□□ -1.8
SMC4-220ENST00000488017 PLAG1Q6DJT9 500 aa3.83□□□□□ -1.8
SMC4-220ENST00000488017 MAEAQ7L5Y9 396 aa3.83□□□□□ -1.8
SMC4-220ENST00000488017 FAM47BQ8NA70 645 aa3.83□□□□□ -1.8
SMC4-220ENST00000488017 KRCC1Q9NPI7 259 aaPredicted RBP3.83□□□□□ -1.8
SMC4-220ENST00000488017 AFF4Q9UHB7 1163 aaKnown RBP3.83□□□□□ -1.8
SMC4-220ENST00000488017 IP6K2Q9UHH9 426 aa3.83□□□□□ -1.8
SMC4-220ENST00000488017 VPS4AQ9UN37 437 aa3.83□□□□□ -1.8
SMC4-220ENST00000488017 LAMP3Q9UQV4 416 aa3.83□□□□□ -1.8
SMC4-220ENST00000488017 SPRY3O43610 288 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 MAP4K4O95819 1239 aaPredicted RBP3.82□□□□□ -1.8
SMC4-220ENST00000488017 WNT1P04628 370 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms