RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 TMTC1Q8IUR5 882 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 SYN2Q92777 582 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-213ENST00000481019 AGPAT1Q99943 283 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 BBS2Q9BXC9 721 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 DCLK3Q9C098 648 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 RAB6CQ9H0N0 254 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 TAS2R14Q9NYV8 317 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 STOML2Q9UJZ1 356 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 ZFHX2Q9C0A1 2572 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-213ENST00000481019 GOLGA8SH3BPF8 625 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 K7ESF4 209 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 IRAK2O43187 625 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 SART1O43290 800 aaKnown RBP12.72□□□□□ -0.37
PTPRF-213ENST00000481019 CCP110O43303 1012 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 CACNG3O60359 315 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 MFAP3LO75121 409 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 DAB1O75553 588 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 KAT7O95251 611 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 TRUB2O95900 331 aaKnown RBP12.72□□□□□ -0.37
PTPRF-213ENST00000481019 PENKP01210 267 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-213ENST00000481019 GYPCP04921 128 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 DRD1P21728 446 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 FLT3P36888 993 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 MAGEA9P43362 315 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 RNASE9P60153 205 aaKnown RBP12.72□□□□□ -0.37
PTPRF-213ENST00000481019 SLC26A9Q7LBE3 791 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 RPLP0P6Q8NHW5 317 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 CPLX3Q8WVH0 158 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 GOLGA1Q92805 767 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 C18orf8Q96DM3 657 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 PRICKLE1Q96MT3 831 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-213ENST00000481019 NOX5Q96PH1 765 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 PNKPQ96T60 521 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 BAG1Q99933 345 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-213ENST00000481019 C11orf70Q9BRQ4 267 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 SYNCQ9H7C4 482 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 ANLNQ9NQW6 1124 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 ARHGEF4Q9NR80 690 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 ASNSD1Q9NWL6 643 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 TLR6Q9Y2C9 796 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 ARIH1Q9Y4X5 557 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-213ENST00000481019 CEP83Q9Y592 693 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 BZW2Q9Y6E2 419 aaKnown RBP12.72□□□□□ -0.37
PTPRF-213ENST00000481019 R4GN57 208 aa12.72□□□□□ -0.37
PTPRF-213ENST00000481019 SYNJ2BP-COX16A0A087WUM0 186 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 A0A0A0MRY4 1105 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 PRRT4C9JH25 899 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 I6L893 689 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-213ENST00000481019 CAPN9O14815 690 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 ARHGAP6O43182 974 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 LAMTOR5O43504 91 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 ACSL4O60488 711 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 HSF2BPO75031 334 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 IPO7O95373 1038 aaKnown RBP12.71□□□□□ -0.37
PTPRF-213ENST00000481019 MOCS2O96007 188 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-213ENST00000481019 GLI1P08151 1106 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 SKILP12757 684 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 HNRNPLP14866 589 aaKnown RBP eCLIP12.71□□□□□ -0.37
PTPRF-213ENST00000481019 MMP8P22894 467 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 EIF2DP41214 584 aaKnown RBP12.71□□□□□ -0.37
PTPRF-213ENST00000481019 KIR2DL1P43626 348 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-213ENST00000481019 HARS2P49590 506 aaKnown RBP12.71□□□□□ -0.37
PTPRF-213ENST00000481019 ATXN1P54253 815 aaKnown RBP12.71□□□□□ -0.37
PTPRF-213ENST00000481019 CDK17Q00537 523 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 AMPD2Q01433 879 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 RING1Q06587 406 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 ARID5BQ14865 1188 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 C2orf27AQ580R0 203 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 EFHC1Q5JVL4 640 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 FAM102AQ5T9C2 384 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-213ENST00000481019 ZNF571Q7Z3V5 609 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-213ENST00000481019 ZSCAN30Q86W11 494 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 TXLNBQ8N3L3 684 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 CPXM2Q8N436 756 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 SPEM1Q8N4L4 309 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 JOSD2Q8TAC2 188 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 WFDC5Q8TCV5 224 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 IPO4Q8TEX9 1081 aaKnown RBP12.71□□□□□ -0.37
PTPRF-213ENST00000481019 USP33Q8TEY7 942 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 ATOH1Q92858 354 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-213ENST00000481019 SERPINB11Q96P15 392 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 DNAJC7Q99615 494 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 PRRX2Q99811 253 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 TMPRSS4Q9NRS4 437 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 DNAJC17Q9NVM6 304 aaKnown RBP12.71□□□□□ -0.37
PTPRF-213ENST00000481019 COX16Q9P0S2 106 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 TMEM59LQ9UK28 342 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 FBXO10Q9UK96 956 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 ZNF510Q9Y2H8 683 aa12.71□□□□□ -0.37
PTPRF-213ENST00000481019 KCNU1A8MYU2 1149 aa12.7□□□□□ -0.38
PTPRF-213ENST00000481019 CHURC1-FNTBB4DL54 471 aa12.7□□□□□ -0.38
PTPRF-213ENST00000481019 APODP05090 189 aa12.7□□□□□ -0.38
PTPRF-213ENST00000481019 FERP16591 822 aa12.7□□□□□ -0.38
PTPRF-213ENST00000481019 HOXD9P28356 352 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-213ENST00000481019 GGCXP38435 758 aa12.7□□□□□ -0.38
PTPRF-213ENST00000481019 GRIA2P42262 883 aa12.7□□□□□ -0.38
PTPRF-213ENST00000481019 PXNP49023 591 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-213ENST00000481019 ADKP55263 362 aaKnown RBP12.7□□□□□ -0.38
PTPRF-213ENST00000481019 CENPCQ03188 943 aa12.7□□□□□ -0.38
PTPRF-213ENST00000481019 ASIC2Q16515 512 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms