RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 CCDC149Q6ZUS6 474 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 TAS1R1Q7RTX1 841 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-209ENST00000479532 UNC93AQ86WB7 457 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 MRPL41Q8IXM3 137 aaKnown RBP6.54□□□□□ -1.36
SF3B1-209ENST00000479532 C2CD4AQ8NCU7 369 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-209ENST00000479532 LNX1Q8TBB1 728 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-209ENST00000479532 C2orf15Q8WU43 125 aaKnown RBP6.54□□□□□ -1.36
SF3B1-209ENST00000479532 AUTS2Q8WXX7 1259 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 MYLIPQ8WY64 445 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 CASP10Q92851 521 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 SEMA4DQ92854 862 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 ISL2Q96A47 359 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 JAKMIP2Q96AA8 810 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 IQCDQ96DY2 449 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 B3GALT6Q96L58 329 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 KLHL5Q96PQ7 755 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 DPH2Q9BQC3 489 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-209ENST00000479532 ACBD6Q9BR61 282 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 CRACR2AQ9BSW2 395 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 LSM14BQ9BX40 385 aaKnown RBP6.54□□□□□ -1.36
SF3B1-209ENST00000479532 VN1R3Q9BXE9 311 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 GSX1Q9H4S2 264 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-209ENST00000479532 SMYD3Q9H7B4 428 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 RXFP1Q9HBX9 757 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 UBE2TQ9NPD8 197 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-209ENST00000479532 APEX2Q9UBZ4 518 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 MAFFQ9ULX9 164 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 BARX2Q9UMQ3 279 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-209ENST00000479532 JRKLQ9Y4A0 524 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 CDY1Q9Y6F8 540 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 ATG2AQ2TAZ0 1938 aa6.54□□□□□ -1.36
SF3B1-209ENST00000479532 TRIOBPQ9H2D6 2365 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 A0A1W2PQC6 194 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 PRRG1O14668 218 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 GABRDO14764 452 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 TEX28O15482 410 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 PDPK1O15530 556 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 CNPP09543 421 aaKnown RBP6.53□□□□□ -1.36
SF3B1-209ENST00000479532 WEE2P0C1S8 567 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 KRT5P13647 590 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 CD58P19256 250 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 SLC9A1P19634 815 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 PON1P27169 355 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 OR1D2P34982 312 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 MAGEA9P43362 315 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 RAP1GAPP47736 663 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 PREPP48147 710 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 NRIP1P48552 1158 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 HNRNPH2P55795 449 aaKnown RBP6.53□□□□□ -1.36
SF3B1-209ENST00000479532 SLC8A3P57103 927 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 INCA1Q0VD86 236 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 PLD1Q13393 1074 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 RAPGEF1Q13905 1077 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 CPSF6Q16630 551 aaKnown RBP eCLIP6.53□□□□□ -1.36
SF3B1-209ENST00000479532 DUSP6Q16828 381 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 ARHGAP44Q17R89 818 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 SLC39A12Q504Y0 691 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 TCEAL5Q5H9L2 206 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 TPGS2Q68CL5 300 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 SLC6A19Q695T7 634 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 SDE2Q6IQ49 451 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 SLC8B1Q6J4K2 584 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 EP400NLQ6ZTU2 488 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 Q7L0L9 218 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 RTL10Q7L3V2 364 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 RRAGAQ7L523 313 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 CACNA2D4Q7Z3S7 1137 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 RBM23Q86U06 439 aaKnown RBP6.53□□□□□ -1.36
SF3B1-209ENST00000479532 SPATA2LQ8IUW3 424 aaPredicted RBP6.53□□□□□ -1.36
SF3B1-209ENST00000479532 PHACTR4Q8IZ21 702 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 ELMOD1Q8N336 334 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 KCT2Q8NC54 265 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 SPPL2BQ8TCT7 592 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 HDAC7Q8WUI4 952 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 PPM1EQ8WY54 764 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 SPAG5Q96R06 1193 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 ERGIC2Q96RQ1 377 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 CDX2Q99626 313 aaPredicted RBP6.53□□□□□ -1.36
SF3B1-209ENST00000479532 SYT15Q9BQS2 421 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 MRPL45Q9BRJ2 306 aaKnown RBP6.53□□□□□ -1.36
SF3B1-209ENST00000479532 MED10Q9BTT4 135 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 NUP58Q9BVL2 599 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 ZCWPW1Q9H0M4 648 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 HSD3B7Q9H2F3 369 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 PLEKHA4Q9H4M7 779 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 APOBEC3GQ9HC16 384 aaKnown RBP6.53□□□□□ -1.36
SF3B1-209ENST00000479532 SSU72Q9NP77 194 aaKnown RBP6.53□□□□□ -1.36
SF3B1-209ENST00000479532 PLCB1Q9NQ66 1216 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 CISHQ9NSE2 258 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 MTMR10Q9NXD2 777 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 IFNKQ9P0W0 207 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 FBXL5Q9UKA1 691 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 STXBP5LQ9Y2K9 1186 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 PCDHB4Q9Y5E5 795 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 MTCH2Q9Y6C9 303 aa6.53□□□□□ -1.36
SF3B1-209ENST00000479532 MTCL1Q9Y4B5 1905 aaKnown RBP6.52□□□□□ -1.37
SF3B1-209ENST00000479532 PLXNA3P51805 1871 aa6.52□□□□□ -1.37
SF3B1-209ENST00000479532 KLHL33A6NCF5 533 aa6.52□□□□□ -1.37
SF3B1-209ENST00000479532 HIDE1A8MVS5 230 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms