RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 ALADP13716 330 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 IGFBP2P18065 325 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 NR4A1P22736 598 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 CYP3A7P24462 503 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 PCP4P48539 62 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 CCR9P51686 369 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 RCAN1P53805 252 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 PTPRRQ15256 657 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 SF3B3Q15393 1217 aaKnown RBP5.71□□□□□ -1.5
UPF3B-203ENST00000478840 TBCCQ15814 346 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 MEA1Q16626 185 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 ANKRD40Q6AI12 368 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 TBC1D3GQ6DHY5 549 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 TBC1D3CQ6IPX1 549 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 R3HCC1LQ7Z5L2 792 aaKnown RBP5.71□□□□□ -1.5
UPF3B-203ENST00000478840 TBC1D3Q8IZP1 549 aaPredicted RBP5.71□□□□□ -1.5
UPF3B-203ENST00000478840 PNPLA1Q8N8W4 532 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 OR52L2PQ8NGH6 319 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 ZCCHC10Q8TBK6 192 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 R3HDM4Q96D70 268 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 MASTLQ96GX5 879 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 PRR25Q96S07 402 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 ADOQ96SZ5 270 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 DPCDQ9BVM2 203 aaPredicted RBP5.71□□□□□ -1.5
UPF3B-203ENST00000478840 KLC2Q9H0B6 622 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 STN1Q9H668 368 aaKnown RBP5.71□□□□□ -1.5
UPF3B-203ENST00000478840 KLC4Q9NSK0 619 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 PPP1R14DQ9NXH3 145 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 CD207Q9UJ71 328 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 RAB21Q9UL25 225 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 ASAP1Q9ULH1 1129 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 SLC12A4Q9UP95 1085 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 ARID1BQ8NFD5 2236 aaPredicted RBP5.71□□□□□ -1.5
UPF3B-203ENST00000478840 AGAP5A6NIR3 686 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 DBX1A6NMT0 343 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 PEX12O00623 359 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 TMPRSS11DO60235 418 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 NXPH3O95157 252 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 SCGB1D1O95968 90 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 FESP07332 822 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 RHOP08100 348 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 CREB1P16220 341 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 BMP7P18075 431 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 LAG3P18627 525 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 MATN1P21941 496 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 GRK5P34947 590 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 IGHMBP2P38935 993 aaKnown RBP5.7□□□□□ -1.5
UPF3B-203ENST00000478840 GPD2P43304 727 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 POLD2P49005 469 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 SELENOPP49908 381 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 TAS2R50P59544 299 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 SUMO2P61956 95 aaKnown RBP5.7□□□□□ -1.5
UPF3B-203ENST00000478840 IRX6P78412 446 aaPredicted RBP5.7□□□□□ -1.5
UPF3B-203ENST00000478840 DEUP1Q05D60 604 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 EIF2B5Q13144 721 aaKnown RBP5.7□□□□□ -1.5
UPF3B-203ENST00000478840 LRRC24Q50LG9 513 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 FAM205BPQ63HN1 556 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 HAUS3Q68CZ6 603 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 MTHFD1LQ6UB35 978 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 PTCHD4Q6ZW05 846 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 GPR149Q86SP6 731 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 CHD1LQ86WJ1 897 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 P3H2Q8IVL5 708 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 NGDNQ8NEJ9 315 aaKnown RBP5.7□□□□□ -1.5
UPF3B-203ENST00000478840 NFKBIDQ8NI38 313 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 RP9Q8TA86 221 aaKnown RBP5.7□□□□□ -1.5
UPF3B-203ENST00000478840 CREB3L4Q8TEY5 395 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 STAMQ92783 540 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 ARRDC3Q96B67 414 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 PTCD3Q96EY7 689 aaKnown RBP5.7□□□□□ -1.5
UPF3B-203ENST00000478840 CDCP1Q9H5V8 836 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 SLC22A11Q9NSA0 550 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 TBCCD1Q9NVR7 557 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 EHD3Q9NZN3 535 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 CEP72Q9P209 647 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 SLC25A10Q9UBX3 287 aaPredicted RBP5.7□□□□□ -1.5
UPF3B-203ENST00000478840 TTLL3Q9Y4R7 772 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 KAT6BQ8WYB5 2073 aa5.7□□□□□ -1.5
UPF3B-203ENST00000478840 GOLGA6L10A0A0M3HER8 536 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 FAM90A7PA6NKC0 464 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 FAM90A22PA8MWA6 464 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 FAM90A12PA8MX19 464 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 FAM90A23PA8MXZ1 464 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 ANP32CO43423 234 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 DLDP09622 509 aaKnown RBP5.69□□□□□ -1.5
UPF3B-203ENST00000478840 ZNF37AP17032 561 aaPredicted RBP5.69□□□□□ -1.5
UPF3B-203ENST00000478840 PSMA4P25789 261 aaKnown RBP5.69□□□□□ -1.5
UPF3B-203ENST00000478840 CLCN2P51788 898 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 DRG2P55039 364 aaKnown RBP5.69□□□□□ -1.5
UPF3B-203ENST00000478840 RPP30P78346 268 aaKnown RBP5.69□□□□□ -1.5
UPF3B-203ENST00000478840 RNASELQ05823 741 aaKnown RBP5.69□□□□□ -1.5
UPF3B-203ENST00000478840 PTP4A2Q12974 167 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 BMPR2Q13873 1038 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 SEC23BQ15437 767 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 KIAA0895LQ68EN5 471 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 WDR93Q6P2C0 686 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 SYNE3Q6ZMZ3 975 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 ARHGEF19Q8IW93 802 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 NGEFQ8N5V2 710 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 SIRT6Q8N6T7 355 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms