RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 HIST1H2AAQ96QV6 131 aa4.83□□□□□ -1.64
UBR3-209ENST00000477461 MID2Q9UJV3 735 aa4.83□□□□□ -1.64
UBR3-209ENST00000477461 PIK3C2BO00750 1634 aa4.83□□□□□ -1.64
UBR3-209ENST00000477461 MYO3AQ8NEV4 1616 aa4.83□□□□□ -1.64
UBR3-209ENST00000477461 UHRF1BP1Q6BDS2 1440 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 MYO5BQ9ULV0 1848 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 MBD3L4A6NDZ8 208 aaPredicted RBP4.82□□□□□ -1.64
UBR3-209ENST00000477461 MBD3L3A6NE82 208 aaPredicted RBP4.82□□□□□ -1.64
UBR3-209ENST00000477461 M0R3H8 397 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 MAP4K4O95819 1239 aaPredicted RBP4.82□□□□□ -1.64
UBR3-209ENST00000477461 CBSLP0DN79 551 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 TRIM27P14373 513 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 TPH1P17752 444 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 KLRC1P26715 233 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 CBSP35520 551 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 GNALP38405 381 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 FMO1Q01740 532 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 CFHR1Q03591 330 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 SEMA5AQ13591 1074 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 IDI1Q13907 227 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 KPNB1Q14974 876 aaKnown RBP4.82□□□□□ -1.64
UBR3-209ENST00000477461 CNGA2Q16280 664 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 PFKFB3Q16875 520 aaPredicted RBP4.82□□□□□ -1.64
UBR3-209ENST00000477461 SLC9C1Q4G0N8 1177 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 CCSAPQ6IQ19 270 aaPredicted RBP4.82□□□□□ -1.64
UBR3-209ENST00000477461 ANO7Q6IWH7 933 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 USP49Q70CQ1 688 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 KRT78Q8N1N4 520 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 FAM71DQ8N9W8 422 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 ACRBPQ8NEB7 543 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 NGDNQ8NEJ9 315 aaKnown RBP4.82□□□□□ -1.64
UBR3-209ENST00000477461 LRTOMTQ8WZ04 291 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 EDC3Q96F86 508 aaKnown RBP4.82□□□□□ -1.64
UBR3-209ENST00000477461 APIPQ96GX9 242 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 PRR11Q96HE9 360 aaPredicted RBP4.82□□□□□ -1.64
UBR3-209ENST00000477461 SARGQ9BW04 601 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 CHST8Q9H2A9 424 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 RIMKLBQ9ULI2 386 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 LRP12Q9Y561 859 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 HS3ST3B1Q9Y662 390 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 ADGRB3O60242 1522 aa4.82□□□□□ -1.64
UBR3-209ENST00000477461 A2ML1A8K2U0 1454 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 RPGRIP1LQ68CZ1 1315 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 KDM5AP29375 1690 aaKnown RBP4.81□□□□□ -1.64
UBR3-209ENST00000477461 ZNF142P52746 1687 aaPredicted RBP4.81□□□□□ -1.64
UBR3-209ENST00000477461 CCP110O43303 1012 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 CAND2O75155 1236 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 MYF5P13349 255 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 CPT1AP50416 773 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 RPS13P62277 151 aaKnown RBP4.81□□□□□ -1.64
UBR3-209ENST00000477461 GPC5P78333 572 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 HTRA4P83105 476 aaPredicted RBP4.81□□□□□ -1.64
UBR3-209ENST00000477461 CCDC149Q6ZUS6 474 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 UNC13DQ70J99 1090 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 C11orf96Q7Z7L8 435 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 PIM3Q86V86 326 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 NMD3Q96D46 503 aaKnown RBP4.81□□□□□ -1.64
UBR3-209ENST00000477461 LRRC27Q9C0I9 530 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 BTBD1Q9H0C5 482 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 AS3MTQ9HBK9 375 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 TBC1D23Q9NUY8 699 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 COL20A1Q9P218 1284 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 AFF4Q9UHB7 1163 aaKnown RBP4.81□□□□□ -1.64
UBR3-209ENST00000477461 OGDHLQ9ULD0 1010 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.81□□□□□ -1.64
UBR3-209ENST00000477461 TMEM131LA2VDJ0 1609 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 NEURL4Q96JN8 1562 aa4.81□□□□□ -1.64
UBR3-209ENST00000477461 CEP170BQ9Y4F5 1589 aaPredicted RBP4.81□□□□□ -1.64
UBR3-209ENST00000477461 SPATA31E1Q6ZUB1 1445 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 UBR1Q8IWV7 1749 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 FAM90A10PA6NDY2 464 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 PRC1O43663 620 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 SNX2O60749 519 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 PRAMEF2O60811 474 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 IL1R1P14778 569 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 CD19P15391 556 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 BTF3P20290 206 aaKnown RBP4.8□□□□□ -1.64
UBR3-209ENST00000477461 ACVR2AP27037 513 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 TACR3P29371 465 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 TBX4P57082 545 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 KIAA0753Q2KHM9 967 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 KIAA1161Q6NSJ0 714 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 SESTD1Q86VW0 696 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 IGFBPL1Q8WX77 278 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 TIFAQ96CG3 184 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 KAZALD1Q96I82 304 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 VPS50Q96JG6 964 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 MSLNLQ96KJ4 702 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 BRIP1Q9BX63 1249 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 NUP62CLQ9H1M0 184 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 DKK4Q9UBT3 224 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 VPS4AQ9UN37 437 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 SLC27A6Q9Y2P4 619 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 SIRT4Q9Y6E7 314 aaPredicted RBP4.8□□□□□ -1.64
UBR3-209ENST00000477461 PPLO60437 1756 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 RIMS2Q9UQ26 1411 aa4.8□□□□□ -1.64
UBR3-209ENST00000477461 FOXN3O00409 490 aaPredicted RBP4.79□□□□□ -1.64
UBR3-209ENST00000477461 MGEA5O60502 916 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 TXNP10599 105 aaKnown RBP4.79□□□□□ -1.64
UBR3-209ENST00000477461 ADRA1DP25100 572 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms