RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 PCDHA11Q9Y5I1 949 aa16.94■□□□□ 0.3
CLCNKA-203ENST00000439316 KAT6AQ92794 2004 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 H3BRJ5 948 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 ENO1P06733 434 aaKnown RBP16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 CYP2F1P24903 491 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 RGS2P41220 211 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 CCNHP51946 323 aaPredicted RBP16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 SLC6A3Q01959 620 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 TBCCQ15814 346 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 DBN1Q16643 649 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 KYAT1Q16773 422 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 PMF1Q6P1K2 205 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 ARCQ7LC44 396 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 CRLF3Q8IUI8 442 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 NDUFAF2Q8N183 169 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 MPP5Q8N3R9 675 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 SCG3Q8WXD2 468 aaKnown RBP16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 TRIM56Q9BRZ2 755 aaKnown RBP16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 SLC24A3Q9HC58 644 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 TAGLN3Q9UI15 199 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 C2CD2Q9Y426 696 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 ZNF286BP0CG31 522 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 SETSIPP0DME0 302 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 AMPD1P23109 780 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 AQP5P55064 265 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 HDAC4P56524 1084 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 NOGQ13253 232 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 THOC5Q13769 683 aaKnown RBP16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 TTC30AQ86WT1 665 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 C12orf29Q8N999 325 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 RBM15BQ8NDT2 890 aaKnown RBP16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 STKLD1Q8NE28 680 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 OR6J1Q8NGC5 347 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 FBXO27Q8NI29 283 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 LRRN4Q8WUT4 740 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 SOCS4Q8WXH5 440 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 CPB2Q96IY4 423 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 QKIQ96PU8 341 aaKnown RBP eCLIP16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 CCDC106Q9BWC9 280 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 C20orf27Q9GZN8 174 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 XAB2Q9HCS7 855 aaKnown RBP16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 DPP3Q9NY33 737 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 MAD1L1Q9Y6D9 718 aa16.93■□□□□ 0.3
CLCNKA-203ENST00000439316 CSDE1O75534 798 aaKnown RBP16.92■□□□□ 0.3
CLCNKA-203ENST00000439316 NPTXRO95502 500 aa16.92■□□□□ 0.3
CLCNKA-203ENST00000439316 SKIP12755 728 aa16.92■□□□□ 0.3
CLCNKA-203ENST00000439316 TUBP50607 506 aa16.92■□□□□ 0.3
CLCNKA-203ENST00000439316 WASHC5Q12768 1159 aa16.92■□□□□ 0.3
CLCNKA-203ENST00000439316 ZRSR2Q15696 482 aaKnown RBP16.92■□□□□ 0.3
CLCNKA-203ENST00000439316 DPYSL2Q16555 572 aa16.92■□□□□ 0.3
CLCNKA-203ENST00000439316 PPP1R26Q5T8A7 1209 aaPredicted RBP16.92■□□□□ 0.3
CLCNKA-203ENST00000439316 MROH9Q5TGP6 573 aa16.92■□□□□ 0.3
CLCNKA-203ENST00000439316 CYS1Q717R9 158 aa16.92■□□□□ 0.3
CLCNKA-203ENST00000439316 NET1Q7Z628 596 aaPredicted RBP16.92■□□□□ 0.3
CLCNKA-203ENST00000439316 TMEM110Q86TL2 294 aa16.92■□□□□ 0.3
CLCNKA-203ENST00000439316 SESTD1Q86VW0 696 aa16.92■□□□□ 0.3
CLCNKA-203ENST00000439316 LINC01465Q8N7H1 131 aa16.92■□□□□ 0.3
CLCNKA-203ENST00000439316 FAM161BQ96MY7 647 aa16.92■□□□□ 0.3
CLCNKA-203ENST00000439316 MOCS1Q9NZB8 636 aa16.92■□□□□ 0.3
CLCNKA-203ENST00000439316 A0A087WZ62 844 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 SPECC1L-ADORA2AF8WAN1 911 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 PAPSS1O43252 624 aaPredicted RBP16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 TM7SF2O76062 418 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 ARF4P18085 180 aaPredicted RBP16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 CNTFP26441 200 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 GBE1Q04446 702 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 SLC10A2Q12908 348 aaPredicted RBP16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 SEMA5AQ13591 1074 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 DEFB115Q30KQ5 88 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 DNAL1Q4LDG9 190 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 PPP6R3Q5H9R7 873 aaPredicted RBP16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 STEAP4Q687X5 459 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 ADGRF2Q8IZF7 708 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 DTX3LQ8TDB6 740 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 DEPDC1BQ8WUY9 529 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 CAPNS2Q96L46 248 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 APBA2Q99767 749 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 SYT15Q9BQS2 421 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 FDXACB1Q9BRP7 624 aaPredicted RBP16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 C16orf70Q9BSU1 422 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 ARHGAP39Q9C0H5 1083 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 MARCOQ9UEW3 520 aaPredicted RBP16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 GABBR2O75899 941 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 ALDH1A1P00352 501 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 SERPINA6P08185 405 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 ZNF865P0CJ78 1059 aaPredicted RBP16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 ZFXP17010 805 aaPredicted RBP16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 DESP17661 470 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 L1CAMP32004 1257 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 PTPN9P43378 593 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 IRX1P78414 480 aaPredicted RBP16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 STX3Q13277 289 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 TRMT5Q32P41 509 aaKnown RBP16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 ZNF484Q5JVG2 852 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 STXBP5Q5T5C0 1151 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 OLFML2BQ68BL8 750 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 TMEM154Q6P9G4 183 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 KYAT3Q6YP21 454 aaKnown RBP16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 MARK2Q7KZI7 788 aaKnown RBP16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms