RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 SH3GL3Q99963 347 aa16.08■□□□□ 0.17
SCARF1-203ENST00000434376 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.08■□□□□ 0.17
SCARF1-203ENST00000434376 FNDC3AQ9Y2H6 1198 aaKnown RBP16.08■□□□□ 0.17
SCARF1-203ENST00000434376 MYO9BQ13459 2157 aa16.08■□□□□ 0.16
SCARF1-203ENST00000434376 C5orf42Q9H799 3197 aa16.08■□□□□ 0.16
SCARF1-203ENST00000434376 LCTP09848 1927 aa16.08■□□□□ 0.16
SCARF1-203ENST00000434376 UNC5CO95185 931 aa16.08■□□□□ 0.16
SCARF1-203ENST00000434376 ERVK-10P10266 1014 aa16.08■□□□□ 0.16
SCARF1-203ENST00000434376 PDE1BQ01064 536 aa16.08■□□□□ 0.16
SCARF1-203ENST00000434376 RBBP5Q15291 538 aaKnown RBP16.08■□□□□ 0.16
SCARF1-203ENST00000434376 ARMC3Q5W041 872 aa16.08■□□□□ 0.16
SCARF1-203ENST00000434376 OTOAQ7RTW8 1153 aa16.08■□□□□ 0.16
SCARF1-203ENST00000434376 POLNQ7Z5Q5 900 aa16.08■□□□□ 0.16
SCARF1-203ENST00000434376 B3GALT6Q96L58 329 aa16.08■□□□□ 0.16
SCARF1-203ENST00000434376 TTC25Q96NG3 672 aa16.08■□□□□ 0.16
SCARF1-203ENST00000434376 CSPG4P5Q96PW8 444 aa16.08■□□□□ 0.16
SCARF1-203ENST00000434376 VPS11Q9H270 941 aa16.08■□□□□ 0.16
SCARF1-203ENST00000434376 PRDM12Q9H4Q4 367 aa16.08■□□□□ 0.16
SCARF1-203ENST00000434376 DRG1Q9Y295 367 aaKnown RBP16.08■□□□□ 0.16
SCARF1-203ENST00000434376 HMBSP08397 361 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 LINGO3P0C6S8 592 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 BST2Q10589 180 aaKnown RBP16.07■□□□□ 0.16
SCARF1-203ENST00000434376 TSNAXIP1Q2TAA8 658 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 BOLA3Q53S33 107 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 SLC30A9Q6PML9 568 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 CYP4V2Q6ZWL3 525 aaPredicted RBP16.07■□□□□ 0.16
SCARF1-203ENST00000434376 TMEM209Q96SK2 561 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 ZNF358Q9NW07 568 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 GOLGA4Q13439 2230 aaKnown RBP16.07■□□□□ 0.16
SCARF1-203ENST00000434376 CDH5P33151 784 aaPredicted RBP16.07■□□□□ 0.16
SCARF1-203ENST00000434376 YWHAZP63104 245 aaKnown RBP16.07■□□□□ 0.16
SCARF1-203ENST00000434376 BLMHQ13867 455 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 NBPF20Q3BBV1 942 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 SCAMP5Q8TAC9 235 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 FAM136AQ96C01 138 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 TMEM30AQ9NV96 361 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 DFFAO00273 331 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 CSH1P0DML2 217 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 CSH2P0DML3 217 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 KCNA4P22459 653 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 PBX3P40426 434 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 GRIK3Q13003 919 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 PPM1JQ5JR12 505 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 COLGALT1Q8NBJ5 622 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 C3orf58Q8NDZ4 430 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 TEKT4Q8WW24 435 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 TBC1D10AQ9BXI6 508 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 KATNBL1Q9H079 304 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 TXNDC16Q9P2K2 825 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 LOXHD1Q8IVV2 1947 aa16.07■□□□□ 0.16
SCARF1-203ENST00000434376 FAM237BA0A1B0GVD1 139 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 MSI1O43347 362 aaKnown RBP16.06■□□□□ 0.16
SCARF1-203ENST00000434376 BCAT1P54687 386 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 TAF1BQ53T94 588 aaPredicted RBP16.06■□□□□ 0.16
SCARF1-203ENST00000434376 RNF220Q5VTB9 566 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 SPATA6LQ8N4H0 392 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 FAM13CQ8NE31 585 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 ZC3H15Q8WU90 426 aaKnown RBP16.06■□□□□ 0.16
SCARF1-203ENST00000434376 UTP4Q969X6 686 aaKnown RBP16.06■□□□□ 0.16
SCARF1-203ENST00000434376 MAGEB18Q96M61 343 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 TSPYL2Q9H2G4 693 aaPredicted RBP16.06■□□□□ 0.16
SCARF1-203ENST00000434376 USP29Q9HBJ7 922 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 DTLQ9NZJ0 730 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 FARP1Q9Y4F1 1045 aaPredicted RBP16.06■□□□□ 0.16
SCARF1-203ENST00000434376 NRCAMQ92823 1304 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 SLC4A1P02730 911 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 PTPN1P18031 435 aaKnown RBP16.06■□□□□ 0.16
SCARF1-203ENST00000434376 CST9Q5W186 159 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 IQSEC1Q6DN90 963 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 ARID3BQ8IVW6 561 aaPredicted RBP16.06■□□□□ 0.16
SCARF1-203ENST00000434376 AGO3Q9H9G7 860 aaKnown RBP16.06■□□□□ 0.16
SCARF1-203ENST00000434376 RNPEPL1Q9HAU8 725 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 PIGVQ9NUD9 493 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 FIS1Q9Y3D6 152 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 KIAA0100Q14667 2235 aaKnown RBP16.06■□□□□ 0.16
SCARF1-203ENST00000434376 RNF103O00237 685 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 ASMTLO95671 621 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 L1CAMP32004 1257 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 PTDSS1P48651 473 aaKnown RBP16.06■□□□□ 0.16
SCARF1-203ENST00000434376 MAP2K5Q13163 448 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 GRB14Q14449 540 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 GALNTL6Q49A17 601 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 KIAA0319Q5VV43 1072 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 CMC1Q7Z7K0 106 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 DNAJC9Q8WXX5 260 aa16.06■□□□□ 0.16
SCARF1-203ENST00000434376 PAPOLBQ9NRJ5 636 aaKnown RBP16.06■□□□□ 0.16
SCARF1-203ENST00000434376 CORO1CQ9ULV4 474 aaPredicted RBP16.06■□□□□ 0.16
SCARF1-203ENST00000434376 ARID2Q68CP9 1835 aa16.05■□□□□ 0.16
SCARF1-203ENST00000434376 SOAT2O75908 522 aa16.05■□□□□ 0.16
SCARF1-203ENST00000434376 RPL10AP62906 217 aaKnown RBP16.05■□□□□ 0.16
SCARF1-203ENST00000434376 KDSRQ06136 332 aa16.05■□□□□ 0.16
SCARF1-203ENST00000434376 NR1H3Q13133 447 aa16.05■□□□□ 0.16
SCARF1-203ENST00000434376 FAM110CQ1W6H9 321 aa16.05■□□□□ 0.16
SCARF1-203ENST00000434376 DCAF4L1Q3SXM0 396 aa16.05■□□□□ 0.16
SCARF1-203ENST00000434376 NIPA2Q8N8Q9 360 aa16.05■□□□□ 0.16
SCARF1-203ENST00000434376 ANKRD52Q8NB46 1076 aa16.05■□□□□ 0.16
SCARF1-203ENST00000434376 OR52K1Q8NGK4 314 aa16.05■□□□□ 0.16
SCARF1-203ENST00000434376 UCMAQ8WVF2 138 aa16.05■□□□□ 0.16
SCARF1-203ENST00000434376 MCUR1Q96AQ8 359 aa16.05■□□□□ 0.16
SCARF1-203ENST00000434376 HEY2Q9UBP5 337 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms