RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 DHX35Q9H5Z1 703 aaKnown RBP11.66□□□□□ -0.54
USP4-205ENST00000431357 UGT1A7Q9HAW7 530 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 UGT1A10Q9HAW8 530 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 UGT1A8Q9HAW9 530 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 GPAMQ9HCL2 828 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 EIF2B3Q9NR50 452 aaKnown RBP11.66□□□□□ -0.54
USP4-205ENST00000431357 RCOR3Q9P2K3 495 aaPredicted RBP11.66□□□□□ -0.54
USP4-205ENST00000431357 DCDC2Q9UHG0 476 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 PLA2G4CQ9UP65 541 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 CCDC195A0A1B0GUA6 201 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 DPPA5A6NC42 116 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 SDR42E2A6NKP2 422 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 CYB561D2O14569 222 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 CXCL11O14625 94 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 ZNF189O75820 626 aaPredicted RBP11.65□□□□□ -0.54
USP4-205ENST00000431357 STK10O94804 968 aaKnown RBP11.65□□□□□ -0.54
USP4-205ENST00000431357 PDHA1P08559 390 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 AOC1P19801 751 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 BAG6P46379 1132 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 AP2B1P63010 937 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 GBE1Q04446 702 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 INSCQ1MX18 579 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 DCAF4L1Q3SXM0 396 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 LRRC8BQ6P9F7 803 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 TMEM154Q6P9G4 183 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 ACOT1Q86TX2 421 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 SCUBE3Q8IX30 993 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 ADGRF2Q8IZF7 708 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 TFB1MQ8WVM0 346 aaKnown RBP11.65□□□□□ -0.54
USP4-205ENST00000431357 MROH8Q9H579 483 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 AP4E1Q9UPM8 1137 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 PTPRFP10586 1907 aa11.65□□□□□ -0.54
USP4-205ENST00000431357 BRCA1P38398 1863 aaKnown RBP11.65□□□□□ -0.54
USP4-205ENST00000431357 A0A0A0MRY4 1105 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 TSPAN1O60635 241 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 FKBP6O75344 327 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 DGKIO75912 1065 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 MYL4P12829 197 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 GRK2P25098 689 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 ACADSBP45954 432 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 CPA2P48052 419 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 ACTR3P61158 418 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 MXRA7P84157 204 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 SLC10A2Q12908 348 aaPredicted RBP11.65□□□□□ -0.55
USP4-205ENST00000431357 RCN2Q14257 317 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 GSTA3Q16772 222 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 FASTKD1Q53R41 847 aaKnown RBP11.65□□□□□ -0.55
USP4-205ENST00000431357 STRADAQ7RTN6 431 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 PSTKQ8IV42 348 aaKnown RBP11.65□□□□□ -0.55
USP4-205ENST00000431357 MPP5Q8N3R9 675 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 LRRC52Q8N7C0 313 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 PIWIL2Q8TC59 973 aaKnown RBP11.65□□□□□ -0.55
USP4-205ENST00000431357 HTR3CQ8WXA8 447 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 ZBTB10Q96DT7 871 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 SPATA13Q96N96 652 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 CSPG4P5Q96PW8 444 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 MRPL45Q9BRJ2 306 aaKnown RBP11.65□□□□□ -0.55
USP4-205ENST00000431357 SCOCQ9UIL1 159 aa11.65□□□□□ -0.55
USP4-205ENST00000431357 MAGEA13PA6NCF6 341 aa11.64□□□□□ -0.55
USP4-205ENST00000431357 AHCYL1O43865 530 aa11.64□□□□□ -0.55
USP4-205ENST00000431357 CSDE1O75534 798 aaKnown RBP11.64□□□□□ -0.55
USP4-205ENST00000431357 MAP3K6O95382 1288 aa11.64□□□□□ -0.55
USP4-205ENST00000431357 LGALS2P05162 132 aa11.64□□□□□ -0.55
USP4-205ENST00000431357 KITP10721 976 aa11.64□□□□□ -0.55
USP4-205ENST00000431357 PGAM1P18669 254 aa11.64□□□□□ -0.55
USP4-205ENST00000431357 ARL4AP40617 200 aa11.64□□□□□ -0.55
USP4-205ENST00000431357 RPL34P49207 117 aaKnown RBP11.64□□□□□ -0.55
USP4-205ENST00000431357 ALDH18A1P54886 795 aaKnown RBP11.64□□□□□ -0.55
USP4-205ENST00000431357 NIPAL4Q0D2K0 466 aa11.64□□□□□ -0.55
USP4-205ENST00000431357 BST2Q10589 180 aaKnown RBP11.64□□□□□ -0.55
USP4-205ENST00000431357 CES4AQ5XG92 561 aa11.64□□□□□ -0.55
USP4-205ENST00000431357 AAGABQ6PD74 315 aa11.64□□□□□ -0.55
USP4-205ENST00000431357 SDCCAG8Q86SQ7 713 aaPredicted RBP11.64□□□□□ -0.55
USP4-205ENST00000431357 MYLK4Q86YV6 388 aaPredicted RBP11.64□□□□□ -0.55
USP4-205ENST00000431357 ULK2Q8IYT8 1036 aa11.64□□□□□ -0.55
USP4-205ENST00000431357 DTX3LQ8TDB6 740 aa11.64□□□□□ -0.55
USP4-205ENST00000431357 NLRP7Q8WX94 980 aa11.64□□□□□ -0.55
USP4-205ENST00000431357 KCTD15Q96SI1 283 aaPredicted RBP11.64□□□□□ -0.55
USP4-205ENST00000431357 ZNF184Q99676 751 aaPredicted RBP11.64□□□□□ -0.55
USP4-205ENST00000431357 MTMR10Q9NXD2 777 aa11.64□□□□□ -0.55
USP4-205ENST00000431357 SOX13Q9UN79 622 aa11.64□□□□□ -0.55
USP4-205ENST00000431357 APOBEC2Q9Y235 224 aaKnown RBP11.64□□□□□ -0.55
USP4-205ENST00000431357 SNX9Q9Y5X1 595 aa11.64□□□□□ -0.55
USP4-205ENST00000431357 OPHN1O60890 802 aa11.63□□□□□ -0.55
USP4-205ENST00000431357 RTN3O95197 1032 aaPredicted RBP11.63□□□□□ -0.55
USP4-205ENST00000431357 SERPINE1P05121 402 aa11.63□□□□□ -0.55
USP4-205ENST00000431357 RAB27AP51159 221 aa11.63□□□□□ -0.55
USP4-205ENST00000431357 BCAT1P54687 386 aa11.63□□□□□ -0.55
USP4-205ENST00000431357 KDSRQ06136 332 aa11.63□□□□□ -0.55
USP4-205ENST00000431357 ARHGAP1Q07960 439 aa11.63□□□□□ -0.55
USP4-205ENST00000431357 TMCO4Q5TGY1 634 aa11.63□□□□□ -0.55
USP4-205ENST00000431357 MBLAC2Q68D91 279 aa11.63□□□□□ -0.55
USP4-205ENST00000431357 NCBP2-AS2Q69YL0 99 aa11.63□□□□□ -0.55
USP4-205ENST00000431357 PACS1Q6VY07 963 aa11.63□□□□□ -0.55
USP4-205ENST00000431357 RIPOR1Q6ZS17 1223 aa11.63□□□□□ -0.55
USP4-205ENST00000431357 ADGRG6Q86SQ4 1221 aa11.63□□□□□ -0.55
USP4-205ENST00000431357 ZNF410Q86VK4 478 aa11.63□□□□□ -0.55
USP4-205ENST00000431357 ANKRD52Q8NB46 1076 aa11.63□□□□□ -0.55
USP4-205ENST00000431357 BEST2Q8NFU1 509 aa11.63□□□□□ -0.55
USP4-205ENST00000431357 PPP4R1Q8TF05 950 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms