RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ZNF534Q76KX8 674 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 GALNT4Q8N4A0 578 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 EMC1Q8N766 993 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 ACMSDQ8TDX5 336 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 CNKSR2Q8WXI2 1034 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 HSPH1Q92598 858 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 SIGLEC10Q96LC7 697 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 LENG8Q96PV6 779 aaPredicted RBP11.02□□□□□ -0.65
USP54-204ENST00000422491 RANBP9Q96S59 729 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 CGRRF1Q99675 332 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 HAUS8Q9BT25 410 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 ZC3H12CQ9C0D7 883 aaKnown RBP11.02□□□□□ -0.65
USP54-204ENST00000422491 KLC2Q9H0B6 622 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 RSAD1Q9HA92 442 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 PLGRKTQ9HBL7 147 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 PPP1R1BQ9UD71 204 aaPredicted RBP11.02□□□□□ -0.65
USP54-204ENST00000422491 ZNF711Q9Y462 761 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 WDR64B1ANS9 1081 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 ENDOD1O94919 500 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 APRTP07741 180 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 CNTFP26441 200 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 ENTPD1P49961 510 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 JAK3P52333 1124 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 ABCE1P61221 599 aaKnown RBP11.01□□□□□ -0.65
USP54-204ENST00000422491 PFKPQ01813 784 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 PDE1CQ14123 709 aaPredicted RBP11.01□□□□□ -0.65
USP54-204ENST00000422491 ACAP1Q15027 740 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 TRAPPC3LQ5T215 181 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 EPGNQ6UW88 154 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 LPCAT2Q7L5N7 544 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 SP8Q8IXZ3 490 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 MPP5Q8N3R9 675 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 TMEM102Q8N9M5 508 aaPredicted RBP11.01□□□□□ -0.65
USP54-204ENST00000422491 CHURC1Q8WUH1 139 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 ZNF512Q96ME7 567 aaPredicted RBP11.01□□□□□ -0.65
USP54-204ENST00000422491 SERPINI1Q99574 410 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 CCT7Q99832 543 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 IMPG2Q9BZV3 1241 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 PDLIM7Q9NR12 457 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 RRN3Q9NYV6 651 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 CNTNAP2Q9UHC6 1331 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 VPS28Q9UK41 221 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 CCNL1Q9UK58 526 aaPredicted RBP11.01□□□□□ -0.65
USP54-204ENST00000422491 CNOT11Q9UKZ1 510 aaKnown RBP11.01□□□□□ -0.65
USP54-204ENST00000422491 AHDC1Q5TGY3 1603 aaPredicted RBP11.01□□□□□ -0.65
USP54-204ENST00000422491 GPR25O00155 361 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 KCNN4O15554 427 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 ADCY6O43306 1168 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 KLHL41O60662 606 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 ATG7O95352 703 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 TRUB2O95900 331 aaKnown RBP11.01□□□□□ -0.65
USP54-204ENST00000422491 ZNF26P17031 533 aaPredicted RBP11.01□□□□□ -0.65
USP54-204ENST00000422491 PSMC3P17980 439 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 FUT4P22083 530 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 NUDT2P50583 147 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 MS4A2Q01362 244 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 SLC10A2Q12908 348 aaPredicted RBP11.01□□□□□ -0.65
USP54-204ENST00000422491 BTG3Q14201 252 aaPredicted RBP11.01□□□□□ -0.65
USP54-204ENST00000422491 VPS72Q15906 364 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 LZTR1Q8N653 840 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 DEPDC1BQ8WUY9 529 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 NLRP7Q8WX94 980 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 CEP170P1Q96L14 293 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 EBNA1BP2Q99848 306 aaKnown RBP11.01□□□□□ -0.65
USP54-204ENST00000422491 OSBPL6Q9BZF3 934 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 COG4Q9H9E3 785 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 MAN1C1Q9NR34 630 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 MOCS1Q9NZB8 636 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 CYTH4Q9UIA0 394 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 SQORQ9Y6N5 450 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 NRXN2Q9P2S2 1712 aa11.01□□□□□ -0.65
USP54-204ENST00000422491 H7C0C1 242 aa11□□□□□ -0.65
USP54-204ENST00000422491 NFIBO00712 420 aa11□□□□□ -0.65
USP54-204ENST00000422491 TPP1O14773 563 aa11□□□□□ -0.65
USP54-204ENST00000422491 STBD1O95210 358 aa11□□□□□ -0.65
USP54-204ENST00000422491 ASS1P00966 412 aaKnown RBP11□□□□□ -0.65
USP54-204ENST00000422491 CST3P01034 146 aaPredicted RBP11□□□□□ -0.65
USP54-204ENST00000422491 PDGFRBP09619 1106 aa11□□□□□ -0.65
USP54-204ENST00000422491 SFNP31947 248 aa11□□□□□ -0.65
USP54-204ENST00000422491 ATP5OP48047 213 aa11□□□□□ -0.65
USP54-204ENST00000422491 TXNL4AP83876 142 aaKnown RBP11□□□□□ -0.65
USP54-204ENST00000422491 GSTM4Q03013 218 aa11□□□□□ -0.65
USP54-204ENST00000422491 CYTH1Q15438 398 aa11□□□□□ -0.65
USP54-204ENST00000422491 SLC9B1Q4ZJI4 515 aa11□□□□□ -0.65
USP54-204ENST00000422491 DSELQ8IZU8 1212 aa11□□□□□ -0.65
USP54-204ENST00000422491 MCUQ8NE86 351 aa11□□□□□ -0.65
USP54-204ENST00000422491 ZBTB45Q96K62 511 aaPredicted RBP11□□□□□ -0.65
USP54-204ENST00000422491 PEBP4Q96S96 227 aa11□□□□□ -0.65
USP54-204ENST00000422491 OXCT2Q9BYC2 517 aaPredicted RBP11□□□□□ -0.65
USP54-204ENST00000422491 CYP26B1Q9NR63 512 aa11□□□□□ -0.65
USP54-204ENST00000422491 CISHQ9NSE2 258 aa11□□□□□ -0.65
USP54-204ENST00000422491 FBXO28Q9NVF7 368 aa11□□□□□ -0.65
USP54-204ENST00000422491 COPG2Q9UBF2 871 aa11□□□□□ -0.65
USP54-204ENST00000422491 USP18Q9UMW8 372 aa11□□□□□ -0.65
USP54-204ENST00000422491 PCDHA11Q9Y5I1 949 aa11□□□□□ -0.65
USP54-204ENST00000422491 NR2E3Q9Y5X4 410 aa11□□□□□ -0.65
USP54-204ENST00000422491 C7orf72A4D263 438 aa11□□□□□ -0.65
USP54-204ENST00000422491 PPEF1O14829 653 aaPredicted RBP11□□□□□ -0.65
USP54-204ENST00000422491 AIM2O14862 343 aa11□□□□□ -0.65
USP54-204ENST00000422491 TBC1D12O60347 775 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms