RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 ZNF571Q7Z3V5 609 aaPredicted RBP15.21■□□□□ 0.03
LIMS1-206ENST00000414829 TMEM25Q86YD3 366 aa15.21■□□□□ 0.03
LIMS1-206ENST00000414829 ETFBKMTQ8IXQ9 262 aa15.21■□□□□ 0.03
LIMS1-206ENST00000414829 MCOLN2Q8IZK6 566 aa15.21■□□□□ 0.03
LIMS1-206ENST00000414829 TMEM105Q8N8V8 129 aa15.21■□□□□ 0.03
LIMS1-206ENST00000414829 NT5C3BQ969T7 300 aa15.21■□□□□ 0.03
LIMS1-206ENST00000414829 ACDQ96AP0 544 aa15.21■□□□□ 0.03
LIMS1-206ENST00000414829 FCRL2Q96LA5 508 aaPredicted RBP15.21■□□□□ 0.03
LIMS1-206ENST00000414829 NPY6RQ99463 290 aa15.21■□□□□ 0.03
LIMS1-206ENST00000414829 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.21■□□□□ 0.03
LIMS1-206ENST00000414829 DEF6Q9H4E7 631 aa15.21■□□□□ 0.03
LIMS1-206ENST00000414829 PARVAQ9NVD7 372 aa15.21■□□□□ 0.03
LIMS1-206ENST00000414829 TMEM59LQ9UK28 342 aa15.21■□□□□ 0.03
LIMS1-206ENST00000414829 SSU72P8A0A1W2PR75 194 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 GOLGA6L6A8MZA4 724 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 AKR1B15C9JRZ8 316 aaPredicted RBP15.2■□□□□ 0.02
LIMS1-206ENST00000414829 DCNP07585 359 aaKnown RBP15.2■□□□□ 0.02
LIMS1-206ENST00000414829 CHRNB1P11230 501 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 PTPN9P43378 593 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 CCR3P51677 355 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 VCPP55072 806 aaKnown RBP15.2■□□□□ 0.02
LIMS1-206ENST00000414829 DEUP1Q05D60 604 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 PTP4A2Q12974 167 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 NME3Q13232 169 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 GRAMD4Q6IC98 578 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 DCUN1D2Q6PH85 259 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 MAMSTRQ6ZN01 415 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 TPGS1Q6ZTW0 290 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 TRMT11Q7Z4G4 463 aaKnown RBP15.2■□□□□ 0.02
LIMS1-206ENST00000414829 ZNF687Q8N1G0 1237 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 DTWD2Q8NBA8 298 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 HJURPQ8NCD3 748 aaPredicted RBP15.2■□□□□ 0.02
LIMS1-206ENST00000414829 ADAM32Q8TC27 787 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 KCNV2Q8TDN2 545 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 DDI1Q8WTU0 396 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 WBP2Q969T9 261 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 NCAPGQ9BPX3 1015 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 LMAN1LQ9HAT1 526 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 MRPL47Q9HD33 250 aaKnown RBP15.2■□□□□ 0.02
LIMS1-206ENST00000414829 ARHGEF4Q9NR80 690 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 ABHD10Q9NUJ1 306 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 DNAJC17Q9NVM6 304 aaKnown RBP15.2■□□□□ 0.02
LIMS1-206ENST00000414829 ARIH1Q9Y4X5 557 aaPredicted RBP15.2■□□□□ 0.02
LIMS1-206ENST00000414829 COL4A2P08572 1712 aa15.2■□□□□ 0.02
LIMS1-206ENST00000414829 SHISA7A6NL88 538 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 SIGLEC16A6NMB1 481 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 KCNU1A8MYU2 1149 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 F5H5T6 163 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 DDX3XO00571 662 aaKnown RBP eCLIP15.19■□□□□ 0.02
LIMS1-206ENST00000414829 GALR2O43603 387 aaPredicted RBP15.19■□□□□ 0.02
LIMS1-206ENST00000414829 KAT7O95251 611 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 MOCS2O96007 188 aaPredicted RBP15.19■□□□□ 0.02
LIMS1-206ENST00000414829 PDGFRAP16234 1089 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 FLT3P36888 993 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 OPRD1P41143 372 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 GALK1P51570 392 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 EIF4EBP2Q13542 120 aaPredicted RBP15.19■□□□□ 0.02
LIMS1-206ENST00000414829 ARL13BQ3SXY8 428 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 ZC3H12AQ5D1E8 599 aaKnown RBP15.19■□□□□ 0.02
LIMS1-206ENST00000414829 RABGAP1LQ5R372 815 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 HGSNATQ68CP4 663 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 STRADAQ7RTN6 431 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 TMC6Q7Z403 805 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 SPEM1Q8N4L4 309 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 TERB1Q8NA31 727 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 TMA16Q96EY4 203 aaKnown RBP15.19■□□□□ 0.02
LIMS1-206ENST00000414829 WDCPQ9H6R7 721 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 DLGAP2Q9P1A6 1054 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 ADAMTS1Q9UHI8 967 aa15.19■□□□□ 0.02
LIMS1-206ENST00000414829 ZDBF2Q9HCK1 2354 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 C2CD4BA6NLJ0 364 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 LAMTOR5O43504 91 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 TULP3O75386 442 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 FTLP02792 175 aaPredicted RBP15.18■□□□□ 0.02
LIMS1-206ENST00000414829 SKILP12757 684 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 GPD1P21695 349 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 TNFRSF4P43489 277 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 DGKGP49619 791 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 CXCR3P49682 368 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 ZNF75DP51815 510 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 PTPN5P54829 565 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 OXCT1P55809 520 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 EIF4HQ15056 248 aaKnown RBP15.18■□□□□ 0.02
LIMS1-206ENST00000414829 GAB4Q2WGN9 574 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 C2CD6Q53TS8 623 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 FYB2Q5VWT5 728 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 FSTL4Q6MZW2 842 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 CHSY1Q86X52 802 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 C1orf210Q8IVY1 113 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 ZNF653Q96CK0 615 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 CHFRQ96EP1 664 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 MCEEQ96PE7 176 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 ISCUQ9H1K1 167 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 SPATA6Q9NWH7 488 aaPredicted RBP15.18■□□□□ 0.02
LIMS1-206ENST00000414829 LCMT1Q9UIC8 334 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 SLC27A6Q9Y2P4 619 aa15.18■□□□□ 0.02
LIMS1-206ENST00000414829 MTF2Q9Y483 593 aaPredicted RBP15.18■□□□□ 0.02
LIMS1-206ENST00000414829 F5P12259 2224 aa15.17■□□□□ 0.02
LIMS1-206ENST00000414829 SYNJ2BP-COX16A0A087WUM0 186 aa15.17■□□□□ 0.02
LIMS1-206ENST00000414829 TBC1D3BA6NDS4 549 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms