RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 UBXN6Q9BZV1 441 aa29.84■■■□□ 2.37
HMGB1-205ENST00000399494 DCLK3Q9C098 648 aa29.84■■■□□ 2.37
HMGB1-205ENST00000399494 ITM2CQ9NQX7 267 aa29.84■■■□□ 2.37
HMGB1-205ENST00000399494 SPEGQ15772 3267 aa29.84■■■□□ 2.37
HMGB1-205ENST00000399494 FAM221BA6H8Z2 402 aa29.83■■■□□ 2.37
HMGB1-205ENST00000399494 SRRM3A6NNA2 597 aaPredicted RBP29.83■■■□□ 2.37
HMGB1-205ENST00000399494 H0Y626 953 aa29.83■■■□□ 2.37
HMGB1-205ENST00000399494 TRIM16O95361 564 aa29.83■■■□□ 2.37
HMGB1-205ENST00000399494 AFPP02771 609 aaKnown RBP29.83■■■□□ 2.37
HMGB1-205ENST00000399494 HMBSP08397 361 aa29.83■■■□□ 2.37
HMGB1-205ENST00000399494 MAOBP27338 520 aa29.83■■■□□ 2.37
HMGB1-205ENST00000399494 CD6P30203 668 aa29.83■■■□□ 2.37
HMGB1-205ENST00000399494 EFEMP1Q12805 493 aa29.83■■■□□ 2.37
HMGB1-205ENST00000399494 SLC14A1Q13336 389 aa29.83■■■□□ 2.37
HMGB1-205ENST00000399494 PLEKHG6Q3KR16 790 aa29.83■■■□□ 2.37
HMGB1-205ENST00000399494 FAXDC2Q96IV6 333 aa29.83■■■□□ 2.37
HMGB1-205ENST00000399494 PIWIL1Q96J94 861 aaKnown RBP29.83■■■□□ 2.37
HMGB1-205ENST00000399494 MKRN2Q9H000 416 aaKnown RBP29.83■■■□□ 2.37
HMGB1-205ENST00000399494 PRDM16Q9HAZ2 1276 aa29.83■■■□□ 2.37
HMGB1-205ENST00000399494 WSB2Q9NYS7 404 aaPredicted RBP29.83■■■□□ 2.37
HMGB1-205ENST00000399494 SUSD2Q9UGT4 822 aa29.83■■■□□ 2.37
HMGB1-205ENST00000399494 RASAL2Q9UJF2 1139 aa29.83■■■□□ 2.37
HMGB1-205ENST00000399494 AGO1Q9UL18 857 aaKnown RBP29.83■■■□□ 2.37
HMGB1-205ENST00000399494 NPC1O15118 1278 aa29.82■■■□□ 2.36
HMGB1-205ENST00000399494 P4HA2O15460 535 aa29.82■■■□□ 2.36
HMGB1-205ENST00000399494 CORO1AP31146 461 aaKnown RBP29.82■■■□□ 2.36
HMGB1-205ENST00000399494 IL12RB1P42701 662 aa29.82■■■□□ 2.36
HMGB1-205ENST00000399494 MTIF2P46199 727 aaKnown RBP29.82■■■□□ 2.36
HMGB1-205ENST00000399494 ZNF132P52740 706 aa29.82■■■□□ 2.36
HMGB1-205ENST00000399494 HNRNPDQ14103 355 aaKnown RBP29.82■■■□□ 2.36
HMGB1-205ENST00000399494 STARD3Q14849 445 aa29.82■■■□□ 2.36
HMGB1-205ENST00000399494 WDR45BQ5MNZ6 344 aa29.82■■■□□ 2.36
HMGB1-205ENST00000399494 TATDN2Q93075 761 aa29.82■■■□□ 2.36
HMGB1-205ENST00000399494 TOE1Q96GM8 510 aaKnown RBP29.82■■■□□ 2.36
HMGB1-205ENST00000399494 THAP9Q9H5L6 903 aa29.82■■■□□ 2.36
HMGB1-205ENST00000399494 ANO10Q9NW15 660 aa29.82■■■□□ 2.36
HMGB1-205ENST00000399494 TMEM63CQ9P1W3 806 aa29.82■■■□□ 2.36
HMGB1-205ENST00000399494 USP36Q9P275 1121 aaKnown RBP29.82■■■□□ 2.36
HMGB1-205ENST00000399494 PMM2O15305 246 aa29.81■■■□□ 2.36
HMGB1-205ENST00000399494 RDXP35241 583 aaKnown RBP29.81■■■□□ 2.36
HMGB1-205ENST00000399494 LRMPQ12912 555 aa29.81■■■□□ 2.36
HMGB1-205ENST00000399494 STX1AQ16623 288 aa29.81■■■□□ 2.36
HMGB1-205ENST00000399494 RAB41Q5JT25 222 aa29.81■■■□□ 2.36
HMGB1-205ENST00000399494 CAVIN1Q6NZI2 390 aaKnown RBP29.81■■■□□ 2.36
HMGB1-205ENST00000399494 CHCHD4Q8N4Q1 142 aa29.81■■■□□ 2.36
HMGB1-205ENST00000399494 TTC39CQ8N584 583 aa29.81■■■□□ 2.36
HMGB1-205ENST00000399494 SLC4A11Q8NBS3 891 aa29.81■■■□□ 2.36
HMGB1-205ENST00000399494 ZCCHC14Q8WYQ9 949 aaKnown RBP29.81■■■□□ 2.36
HMGB1-205ENST00000399494 DNASE2BQ8WZ79 361 aa29.81■■■□□ 2.36
HMGB1-205ENST00000399494 CAMK1GQ96NX5 476 aa29.81■■■□□ 2.36
HMGB1-205ENST00000399494 CLEC4EQ9ULY5 219 aa29.81■■■□□ 2.36
HMGB1-205ENST00000399494 WDFY3Q8IZQ1 3526 aa29.8■■■□□ 2.36
HMGB1-205ENST00000399494 KCNJ18B7U540 433 aa29.8■■■□□ 2.36
HMGB1-205ENST00000399494 SH3BP5O60239 455 aa29.8■■■□□ 2.36
HMGB1-205ENST00000399494 GNSP15586 552 aa29.8■■■□□ 2.36
HMGB1-205ENST00000399494 PTMSP20962 102 aa29.8■■■□□ 2.36
HMGB1-205ENST00000399494 DENND1CQ8IV53 801 aa29.8■■■□□ 2.36
HMGB1-205ENST00000399494 UCMAQ8WVF2 138 aa29.8■■■□□ 2.36
HMGB1-205ENST00000399494 TMEM176AQ96HP8 235 aa29.8■■■□□ 2.36
HMGB1-205ENST00000399494 NT5C1BQ96P26 610 aa29.8■■■□□ 2.36
HMGB1-205ENST00000399494 ELOVL2Q9NXB9 296 aa29.8■■■□□ 2.36
HMGB1-205ENST00000399494 RAD23BP54727 409 aa29.79■■■□□ 2.36
HMGB1-205ENST00000399494 RAB44Q7Z6P3 723 aaPredicted RBP29.79■■■□□ 2.36
HMGB1-205ENST00000399494 PIGZQ86VD9 579 aa29.79■■■□□ 2.36
HMGB1-205ENST00000399494 ARHGAP18Q8N392 663 aa29.79■■■□□ 2.36
HMGB1-205ENST00000399494 RBBP8NLQ8NC74 664 aaPredicted RBP29.79■■■□□ 2.36
HMGB1-205ENST00000399494 ARID3AQ99856 593 aa29.79■■■□□ 2.36
HMGB1-205ENST00000399494 GPR174Q9BXC1 333 aa29.79■■■□□ 2.36
HMGB1-205ENST00000399494 CISHQ9NSE2 258 aa29.79■■■□□ 2.36
HMGB1-205ENST00000399494 MARCH2Q9P0N8 246 aa29.79■■■□□ 2.36
HMGB1-205ENST00000399494 NFE2L3Q9Y4A8 694 aa29.79■■■□□ 2.36
HMGB1-205ENST00000399494 TBXAS1P24557 533 aaPredicted RBP29.78■■■□□ 2.36
HMGB1-205ENST00000399494 YWHAEP62258 255 aaKnown RBP29.78■■■□□ 2.36
HMGB1-205ENST00000399494 CUL2Q13617 745 aa29.78■■■□□ 2.36
HMGB1-205ENST00000399494 TRIP6Q15654 476 aaKnown RBP29.78■■■□□ 2.36
HMGB1-205ENST00000399494 ZNF423Q2M1K9 1284 aa29.78■■■□□ 2.36
HMGB1-205ENST00000399494 HSP90AA4PQ58FG1 418 aa29.78■■■□□ 2.36
HMGB1-205ENST00000399494 ARHGAP17Q68EM7 881 aa29.78■■■□□ 2.36
HMGB1-205ENST00000399494 TMPRSS6Q8IU80 811 aa29.78■■■□□ 2.36
HMGB1-205ENST00000399494 IRF2BP1Q8IU81 584 aa29.78■■■□□ 2.36
HMGB1-205ENST00000399494 CPXM2Q8N436 756 aa29.78■■■□□ 2.36
HMGB1-205ENST00000399494 CADM4Q8NFZ8 388 aa29.78■■■□□ 2.36
HMGB1-205ENST00000399494 FAM208BQ5VWN6 2430 aa29.78■■■□□ 2.36
HMGB1-205ENST00000399494 SLC12A8A0AV02 714 aa29.77■■■□□ 2.36
HMGB1-205ENST00000399494 NCAM1P13591 858 aa29.77■■■□□ 2.36
HMGB1-205ENST00000399494 TPMTP51580 245 aa29.77■■■□□ 2.36
HMGB1-205ENST00000399494 YWHAGP61981 247 aaKnown RBP eCLIP29.77■■■□□ 2.36
HMGB1-205ENST00000399494 GRIK2Q13002 908 aa29.77■■■□□ 2.36
HMGB1-205ENST00000399494 ZNF234Q14588 700 aa29.77■■■□□ 2.36
HMGB1-205ENST00000399494 PM20D1Q6GTS8 502 aa29.77■■■□□ 2.36
HMGB1-205ENST00000399494 ANKS1BQ7Z6G8 1248 aa29.77■■■□□ 2.36
HMGB1-205ENST00000399494 FAM217AQ8IXS0 508 aa29.77■■■□□ 2.36
HMGB1-205ENST00000399494 ANKRD52Q8NB46 1076 aa29.77■■■□□ 2.36
HMGB1-205ENST00000399494 SIPA1Q96FS4 1042 aa29.77■■■□□ 2.36
HMGB1-205ENST00000399494 SLC2A11Q9BYW1 496 aa29.77■■■□□ 2.36
HMGB1-205ENST00000399494 ZDHHC5Q9C0B5 715 aa29.77■■■□□ 2.36
HMGB1-205ENST00000399494 STRIP2Q9ULQ0 834 aa29.77■■■□□ 2.36
HMGB1-205ENST00000399494 DMXL2Q8TDJ6 3036 aa29.77■■■□□ 2.36
HMGB1-205ENST00000399494 A0A1B0GTW7 788 aa29.76■■■□□ 2.35
HMGB1-205ENST00000399494 SYNCRIPO60506 623 aaKnown RBP29.76■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms