RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 ARPINQ7Z6K5 226 aa21.79■■□□□ 1.08
UPF3A-202ENST00000375299 CDKL3Q8IVW4 592 aaPredicted RBP21.79■■□□□ 1.08
UPF3A-202ENST00000375299 REPS2Q8NFH8 660 aa21.79■■□□□ 1.08
UPF3A-202ENST00000375299 PCDH19Q8TAB3 1148 aa21.79■■□□□ 1.08
UPF3A-202ENST00000375299 PRPF31Q8WWY3 499 aaKnown RBP21.79■■□□□ 1.08
UPF3A-202ENST00000375299 GCOM2Q9BZD3 368 aaPredicted RBP21.79■■□□□ 1.08
UPF3A-202ENST00000375299 PCDH18Q9HCL0 1135 aa21.79■■□□□ 1.08
UPF3A-202ENST00000375299 TMCO1Q9UM00 188 aa21.79■■□□□ 1.08
UPF3A-202ENST00000375299 TPP1O14773 563 aa21.79■■□□□ 1.08
UPF3A-202ENST00000375299 ALDOAP04075 364 aaKnown RBP21.79■■□□□ 1.08
UPF3A-202ENST00000375299 PRKCBP05771 671 aa21.79■■□□□ 1.08
UPF3A-202ENST00000375299 DEUP1Q05D60 604 aa21.79■■□□□ 1.08
UPF3A-202ENST00000375299 ITGA9Q13797 1035 aa21.79■■□□□ 1.08
UPF3A-202ENST00000375299 PDE1CQ14123 709 aaPredicted RBP21.79■■□□□ 1.08
UPF3A-202ENST00000375299 OGFRL1Q5TC84 451 aaPredicted RBP21.79■■□□□ 1.08
UPF3A-202ENST00000375299 ARMC3Q5W041 872 aa21.79■■□□□ 1.08
UPF3A-202ENST00000375299 ZNF772Q68DY9 489 aaPredicted RBP21.79■■□□□ 1.08
UPF3A-202ENST00000375299 ATG14Q6ZNE5 492 aa21.79■■□□□ 1.08
UPF3A-202ENST00000375299 KBTBD6Q86V97 674 aa21.79■■□□□ 1.08
UPF3A-202ENST00000375299 TFB1MQ8WVM0 346 aaKnown RBP21.79■■□□□ 1.08
UPF3A-202ENST00000375299 DTNAQ9Y4J8 743 aa21.79■■□□□ 1.08
UPF3A-202ENST00000375299 ZNF195O14628 629 aa21.78■■□□□ 1.08
UPF3A-202ENST00000375299 B4GALT4O60513 344 aa21.78■■□□□ 1.08
UPF3A-202ENST00000375299 PYGLP06737 847 aa21.78■■□□□ 1.08
UPF3A-202ENST00000375299 GRK2P25098 689 aa21.78■■□□□ 1.08
UPF3A-202ENST00000375299 FRMD7Q6ZUT3 714 aa21.78■■□□□ 1.08
UPF3A-202ENST00000375299 CYS1Q717R9 158 aa21.78■■□□□ 1.08
UPF3A-202ENST00000375299 ATP2A3Q93084 1043 aa21.78■■□□□ 1.08
UPF3A-202ENST00000375299 TMEM176AQ96HP8 235 aa21.78■■□□□ 1.08
UPF3A-202ENST00000375299 RGS2P41220 211 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 MTTPP55157 894 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 BOLA3Q53S33 107 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 OR6B2Q6IFH4 312 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 SCYL2Q6P3W7 929 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 FAM183BPQ6ZVS7 135 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 TMC7Q7Z402 723 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 C10orf107Q8IVU9 208 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 EFCAB3Q8N7B9 438 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 NMD3Q96D46 503 aaKnown RBP21.77■■□□□ 1.08
UPF3A-202ENST00000375299 HIC2Q96JB3 615 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 CLIC5Q9NZA1 410 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 DCDC2Q9UHG0 476 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 IGKV6D-21A0A0A0MT36 114 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 PIK3R2O00459 728 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 PGM3O95394 542 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 NCF2P19878 526 aaPredicted RBP21.77■■□□□ 1.08
UPF3A-202ENST00000375299 ADORA2AP29274 412 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 PRDX6P30041 224 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 FDFT1P37268 417 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 GRIA1P42261 906 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 OSTNP61366 133 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 SNAPC2Q13487 334 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 PEX6Q13608 980 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 LARP7Q4G0J3 582 aaKnown RBP eCLIP21.77■■□□□ 1.08
UPF3A-202ENST00000375299 VWA5B1Q5TIE3 1220 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 STEAP4Q687X5 459 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 MARVELD2Q8N4S9 558 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 UBA3Q8TBC4 463 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 PIWIL1Q96J94 861 aaKnown RBP21.77■■□□□ 1.08
UPF3A-202ENST00000375299 MPP4Q96JB8 637 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 PRICKLE1Q96MT3 831 aaPredicted RBP21.77■■□□□ 1.08
UPF3A-202ENST00000375299 KCNK16Q96T55 309 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 IFT122Q9HBG6 1241 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 XPNPEP3Q9NQH7 507 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 NRBP2Q9NSY0 501 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 SLC17A6Q9P2U8 582 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 INPP5FQ9Y2H2 1132 aa21.77■■□□□ 1.08
UPF3A-202ENST00000375299 RLFQ13129 1914 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 PHIPQ8WWQ0 1821 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 SSC5DA1L4H1 1573 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 LOC100653049A0A140TA62 436 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 CILPO75339 1184 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 MAFO75444 373 aaPredicted RBP21.76■■□□□ 1.07
UPF3A-202ENST00000375299 GCATO75600 419 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 KRT34O76011 436 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 NIPAL4Q0D2K0 466 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 PACS1Q6VY07 963 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 LCA5Q86VQ0 697 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 UNC5BQ8IZJ1 945 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 DGCR14Q96DF8 476 aaKnown RBP21.76■■□□□ 1.07
UPF3A-202ENST00000375299 GCNAQ96QF7 691 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 PTTG2Q9NZH5 202 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 SIX4Q9UIU6 781 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 ARHGAP26Q9UNA1 814 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 LCTP09848 1927 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.76■■□□□ 1.07
UPF3A-202ENST00000375299 GRAP2O75791 330 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 ALDH1A2O94788 518 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 ASLP04424 464 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 COX4I1P13073 169 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 ACAT1P24752 427 aaKnown RBP21.76■■□□□ 1.07
UPF3A-202ENST00000375299 ARRB2P32121 409 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 ALDH1A3P47895 512 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 BACE1P56817 501 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 ABCE1P61221 599 aaKnown RBP21.76■■□□□ 1.07
UPF3A-202ENST00000375299 PHTF2Q8N3S3 785 aa21.76■■□□□ 1.07
UPF3A-202ENST00000375299 ZNF214Q9UL59 606 aaPredicted RBP21.76■■□□□ 1.07
UPF3A-202ENST00000375299 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.75■■□□□ 1.07
UPF3A-202ENST00000375299 CAPN8A6NHC0 703 aa21.75■■□□□ 1.07
UPF3A-202ENST00000375299 DENRO43583 198 aaKnown RBP21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms