RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 ANKRD20A1Q5TYW2 823 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 ANKRD20A3Q5VUR7 823 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 RFX8Q6ZV50 586 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 KDELC2Q7Z4H8 507 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 SPATA2LQ8IUW3 424 aaPredicted RBP11.86□□□□□ -0.51
CUX1-202ENST00000292538 P2RY11Q96G91 374 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 FAM193BQ96PV7 902 aaPredicted RBP11.86□□□□□ -0.51
CUX1-202ENST00000292538 C11orf84Q9BUA3 381 aaPredicted RBP11.86□□□□□ -0.51
CUX1-202ENST00000292538 STARD7Q9NQZ5 370 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 KLHL8Q9P2G9 620 aaPredicted RBP11.86□□□□□ -0.51
CUX1-202ENST00000292538 CXorf49A8MYA2 514 aaPredicted RBP11.86□□□□□ -0.51
CUX1-202ENST00000292538 I6L893 689 aaPredicted RBP11.86□□□□□ -0.51
CUX1-202ENST00000292538 B4GALT3O60512 393 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 DAB1O75553 588 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 SOAT2O75908 522 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 ABHD2P08910 425 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 CKBP12277 381 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 ZFXP17010 805 aaPredicted RBP11.86□□□□□ -0.51
CUX1-202ENST00000292538 ERCC2P18074 760 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 ADRA1BP35368 520 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 WDR4P57081 412 aaKnown RBP11.86□□□□□ -0.51
CUX1-202ENST00000292538 IRX4P78413 519 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 IL9RQ01113 521 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 IRF5Q13568 498 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 SLC1A5Q15758 541 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 DDR2Q16832 855 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 DEFB115Q30KQ5 88 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 OTUD1Q5VV17 481 aaPredicted RBP11.86□□□□□ -0.51
CUX1-202ENST00000292538 LVRNQ6Q4G3 990 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 GLB1LQ6UWU2 654 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 RELL1Q8IUW5 271 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 TMEM86AQ8N2M4 240 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 PGBD4Q96DM1 585 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 CYTH2Q99418 400 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 NPY6RQ99463 290 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 RTP3Q9BQQ7 232 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 PITPNM3Q9BZ71 974 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 NSRP1Q9H0G5 558 aaKnown RBP11.86□□□□□ -0.51
CUX1-202ENST00000292538 RASSF4Q9H2L5 321 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 HCSTQ9UBK5 93 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 DNAJB4Q9UDY4 337 aa11.86□□□□□ -0.51
CUX1-202ENST00000292538 BCLAF3A2AJT9 711 aaKnown RBP11.85□□□□□ -0.51
CUX1-202ENST00000292538 WDR27A2RRH5 827 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 DDHD2O94830 711 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 PSMB4P28070 264 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 FOXN2P32314 431 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 PGFP49763 221 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 GATMP50440 423 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 TSPY1Q01534 308 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 YWHAHQ04917 246 aaPredicted RBP11.85□□□□□ -0.51
CUX1-202ENST00000292538 NOGQ13253 232 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 FBXW10Q5XX13 1052 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 TRMT10BQ6PF06 316 aaKnown RBP11.85□□□□□ -0.51
CUX1-202ENST00000292538 CAND1Q86VP6 1230 aaKnown RBP11.85□□□□□ -0.51
CUX1-202ENST00000292538 ECHDC2Q86YB7 292 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 THEM5Q8N1Q8 247 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 RSPH1Q8WYR4 309 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 CENPTQ96BT3 561 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 OR12D3Q9UGF7 316 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 MYO18AQ92614 2054 aaKnown RBP11.85□□□□□ -0.51
CUX1-202ENST00000292538 DFFAO00273 331 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 ALDH1A1P00352 501 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 GRK4P32298 578 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 RPL9P32969 192 aaKnown RBP11.85□□□□□ -0.51
CUX1-202ENST00000292538 GPR15P49685 360 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 ATN1P54259 1190 aaPredicted RBP11.85□□□□□ -0.51
CUX1-202ENST00000292538 TUSC3Q13454 348 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 KLHL38Q2WGJ6 581 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 MROH9Q5TGP6 573 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 RTN4RL1Q86UN2 441 aaPredicted RBP11.85□□□□□ -0.51
CUX1-202ENST00000292538 TTC16Q8NEE8 873 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 ATXN7L3BQ96GX2 97 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 COLEC11Q9BWP8 271 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 SLC17A7Q9P2U7 560 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 LGALS13Q9UHV8 139 aa11.85□□□□□ -0.51
CUX1-202ENST00000292538 NDC80O14777 642 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 CHADO15335 359 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 TADA2AO75478 443 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 TCEA3O75764 348 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 IGHA2P01877 340 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 PYGBP11216 843 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 ADRA1DP25100 572 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 ARL13BQ3SXY8 428 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 ABI1Q8IZP0 508 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 CCDC63Q8NA47 563 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 SMC1BQ8NDV3 1235 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 KLHDC9Q8NEP7 349 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 SH3TC2Q8TF17 1288 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 TTC17Q96AE7 1141 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 NCAPGQ9BPX3 1015 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 UPF3AQ9H1J1 476 aaKnown RBP11.84□□□□□ -0.51
CUX1-202ENST00000292538 ACSS3Q9H6R3 686 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 SRRDQ9UH36 339 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 ZSWIM8A7E2V4 1837 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 CFAP69A5D8W1 941 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 STK10O94804 968 aaKnown RBP11.84□□□□□ -0.51
CUX1-202ENST00000292538 OVGP1Q12889 678 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 INTS6LQ5JSJ4 861 aaKnown RBP11.84□□□□□ -0.51
CUX1-202ENST00000292538 LIMS2Q7Z4I7 341 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 ZNF354CQ86Y25 554 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms