RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 AP1B1Q10567 949 aa20.72■□□□□ 0.91
VPS53-201ENST00000291074 SWT1Q5T5J6 900 aaKnown RBP20.72■□□□□ 0.91
VPS53-201ENST00000291074 GSDMBQ8TAX9 411 aa20.72■□□□□ 0.91
VPS53-201ENST00000291074 MECRQ9BV79 373 aa20.72■□□□□ 0.91
VPS53-201ENST00000291074 SLC13A1Q9BZW2 595 aa20.72■□□□□ 0.91
VPS53-201ENST00000291074 PIGVQ9NUD9 493 aa20.72■□□□□ 0.91
VPS53-201ENST00000291074 SEPT10Q9P0V9 454 aa20.72■□□□□ 0.91
VPS53-201ENST00000291074 A0A0A0MRY4 1105 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 A0A0G2JND7 137 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 TRDMT1O14717 391 aaKnown RBP20.71■□□□□ 0.91
VPS53-201ENST00000291074 RFPL1O75677 317 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 SKIV2L2P42285 1042 aaKnown RBP20.71■□□□□ 0.91
VPS53-201ENST00000291074 SERPINB4P48594 390 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 FSCN1Q16658 493 aaKnown RBP20.71■□□□□ 0.91
VPS53-201ENST00000291074 NBPF20Q3BBV1 942 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 SIX6OS1Q8N1H7 587 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 LPPQ93052 612 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 UTP4Q969X6 686 aaKnown RBP20.71■□□□□ 0.91
VPS53-201ENST00000291074 LRRC39Q96DD0 335 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 SPATA13Q96N96 652 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 NPY6RQ99463 290 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 CRTAC1Q9NQ79 661 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 TXLNGQ9NUQ3 528 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 DDX43Q9NXZ2 648 aaKnown RBP20.71■□□□□ 0.91
VPS53-201ENST00000291074 TRPM7Q96QT4 1865 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 HMX2A2RU54 273 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 RNF103O00237 685 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 T-ENOLP0DO92 83 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 TROVE2P10155 538 aaKnown RBP eCLIP20.71■□□□□ 0.91
VPS53-201ENST00000291074 LRPAP1P30533 357 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 TKTL1P51854 596 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 SLC8A3P57103 927 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 PURAQ00577 322 aaKnown RBP20.71■□□□□ 0.91
VPS53-201ENST00000291074 TAF1BQ53T94 588 aaPredicted RBP20.71■□□□□ 0.91
VPS53-201ENST00000291074 MROH9Q5TGP6 573 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 C4orf22Q6V702 233 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 MTDHQ86UE4 582 aaKnown RBP20.71■□□□□ 0.91
VPS53-201ENST00000291074 PDCD7Q8N8D1 485 aaKnown RBP20.71■□□□□ 0.91
VPS53-201ENST00000291074 COLGALT1Q8NBJ5 622 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 TMEM30AQ9NV96 361 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 ZNF180Q9UJW8 692 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 WDR27A2RRH5 827 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 C2CD2LO14523 706 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 AMHP03971 560 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 NOS2P35228 1153 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 BSPRYQ5W0U4 402 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 GPRIN1Q7Z2K8 1008 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 CHSY1Q86X52 802 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 P2RY11Q96G91 374 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 GAD1Q99259 594 aa20.71■□□□□ 0.91
VPS53-201ENST00000291074 IQCGQ9H095 443 aaKnown RBP20.71■□□□□ 0.91
VPS53-201ENST00000291074 TOP3BO95985 862 aaKnown RBP20.7■□□□□ 0.9
VPS53-201ENST00000291074 CTSHP09668 335 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 CACNA2D1P54289 1103 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 RIPK1Q13546 671 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 TAF1CQ15572 869 aaPredicted RBP20.7■□□□□ 0.9
VPS53-201ENST00000291074 CASC4Q6P4E1 433 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 CCNYQ8ND76 341 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 GSTCDQ8NEC7 633 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 NT5C3BQ969T7 300 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 OXNAD1Q96HP4 312 aaPredicted RBP20.7■□□□□ 0.9
VPS53-201ENST00000291074 SENP8Q96LD8 212 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 KCNK16Q96T55 309 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 ULBP1Q9BZM6 244 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 TSPYL2Q9H2G4 693 aaPredicted RBP20.7■□□□□ 0.9
VPS53-201ENST00000291074 XAB2Q9HCS7 855 aaKnown RBP20.7■□□□□ 0.9
VPS53-201ENST00000291074 ANLNQ9NQW6 1124 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 PCMTD2Q9NV79 361 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 PCDHA11Q9Y5I1 949 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 C2orf71A6NGG8 1288 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 FAM159BA6NKW6 160 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 FAM72CH0Y354 149 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 FYNP06241 537 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 SESN2P58004 480 aaPredicted RBP20.7■□□□□ 0.9
VPS53-201ENST00000291074 DEUP1Q05D60 604 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 PRKD1Q15139 912 aaPredicted RBP20.7■□□□□ 0.9
VPS53-201ENST00000291074 FAM72AQ5TYM5 149 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 FAM72DQ6L9T8 149 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 FAM72BQ86X60 149 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 NME8Q8N427 588 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 C3orf58Q8NDZ4 430 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 WNT8BQ93098 351 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 DNAI2Q9GZS0 605 aa20.7■□□□□ 0.9
VPS53-201ENST00000291074 H3BRJ5 948 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 GABRDO14764 452 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 BNIPLQ7Z465 357 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 ARMC2Q8NEN0 867 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 SLC7A14Q8TBB6 771 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 AGAP11Q8TF27 550 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 DEPDC1BQ8WUY9 529 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 PGLYRP2Q96PD5 576 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 PRDM12Q9H4Q4 367 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 MIOSQ9NXC5 875 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 ZFP69BQ9UJL9 534 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 L3MBTL1Q9Y468 752 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 CDY2AQ9Y6F7 541 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 MYBPHLA2RUH7 354 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 YJEFN3A6XGL0 299 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 E7ENQ6 273 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 I6L893 689 aaPredicted RBP20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms