RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 FAM149B1Q96BN6 582 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 SERPINB11Q96P15 392 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 NOX5Q96PH1 765 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 BBS2Q9BXC9 721 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 SEMA4AQ9H3S1 761 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 POPDC2Q9HBU9 364 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 CBX8Q9HC52 389 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 NLRC4Q9NPP4 1024 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 ARHGEF4Q9NR80 690 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 ZSCAN32Q9NX65 697 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 WDR35Q9P2L0 1181 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 CEP83Q9Y592 693 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 A0A1B0GTH6 734 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 NEDD8-MDP1E9PL57 170 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 IRAK2O43187 625 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 ATG13O75143 517 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 CAVIN2O95810 425 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 APODP05090 189 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 NCAM1P13591 858 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 ZNF445P59923 1031 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 YWHAZP63104 245 aaKnown RBP16.82■□□□□ 0.28
TRIM28-213ENST00000598355 NOMO3P69849 1222 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 ANO4Q32M45 955 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 ZSCAN23Q3MJ62 389 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 HSF5Q4G112 596 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-213ENST00000598355 SYPL2Q5VXT5 272 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 NUGGCQ68CJ6 796 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 FAM183BPQ6ZVS7 135 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 TAC4Q86UU9 113 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 TMEM35BQ8NCS4 154 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 NEK11Q8NG66 645 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 RPLP0P6Q8NHW5 317 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 AZIN2Q96A70 460 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 ACDQ96AP0 544 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 FCRL2Q96LA5 508 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-213ENST00000598355 IRX2Q9BZI1 471 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-213ENST00000598355 NAALADL1Q9UQQ1 740 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 TLR6Q9Y2C9 796 aa16.82■□□□□ 0.28
TRIM28-213ENST00000598355 CCDC163A0A0D9SF12 145 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 PRR23AA6NEV1 266 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 ANTXRLA6NF34 631 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 TEX33O43247 280 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 HSF2BPO75031 334 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 GFPT2O94808 682 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 CYP1A1P04798 512 aaPredicted RBP16.81■□□□□ 0.28
TRIM28-213ENST00000598355 MMEP08473 750 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 CISD3P0C7P0 127 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 CHRNB2P17787 502 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 TNFRSF4P43489 277 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 HARS2P49590 506 aaKnown RBP16.81■□□□□ 0.28
TRIM28-213ENST00000598355 MRE11P49959 708 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 NRLP54845 237 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 MRPS21P82921 87 aaKnown RBP16.81■□□□□ 0.28
TRIM28-213ENST00000598355 FMO1Q01740 532 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 KDSRQ06136 332 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 TAF5Q15542 800 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 PREPLQ4J6C6 727 aaPredicted RBP16.81■□□□□ 0.28
TRIM28-213ENST00000598355 TPGS1Q6ZTW0 290 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 ZDHHC17Q8IUH5 632 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 IPO4Q8TEX9 1081 aaKnown RBP16.81■□□□□ 0.28
TRIM28-213ENST00000598355 DEC1Q9P2X7 70 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 HCN2Q9UL51 889 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 SLC27A6Q9Y2P4 619 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 STARD13Q9Y3M8 1113 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 R4GN57 208 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 EP300Q09472 2414 aaPredicted RBP16.81■□□□□ 0.28
TRIM28-213ENST00000598355 FRYLO94915 3013 aa16.81■□□□□ 0.28
TRIM28-213ENST00000598355 DOCK4Q8N1I0 1966 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 A0A1W2PQC6 194 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 TRIM24O15164 1050 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 DAB1O75553 588 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 HOXD9P28356 352 aaPredicted RBP16.8■□□□□ 0.28
TRIM28-213ENST00000598355 STAT1P42224 750 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 TBX4P57082 545 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 SNX16P57768 344 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 PITX1P78337 314 aaPredicted RBP16.8■□□□□ 0.28
TRIM28-213ENST00000598355 CDR2Q01850 454 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 FAM133BQ5BKY9 247 aaKnown RBP16.8■□□□□ 0.28
TRIM28-213ENST00000598355 EFHC1Q5JVL4 640 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 ADGRF1Q5T601 910 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 GRAMD4Q6IC98 578 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 TOGARAM2Q6ZUX3 1019 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 UNC45BQ8IWX7 931 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 NAT16Q8N8M0 369 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 OLIG1Q8TAK6 271 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 KCNV2Q8TDN2 545 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 SLC20A1Q8WUM9 679 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 BAP1Q92560 729 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 XPO6Q96QU8 1125 aaKnown RBP16.8■□□□□ 0.28
TRIM28-213ENST00000598355 SPAG5Q96R06 1193 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 TTYH3Q9C0H2 523 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 DNAJC17Q9NVM6 304 aaKnown RBP16.8■□□□□ 0.28
TRIM28-213ENST00000598355 MMP17Q9ULZ9 603 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 MYO6Q9UM54 1294 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 ZNF292O60281 2723 aa16.8■□□□□ 0.28
TRIM28-213ENST00000598355 TRUB2O95900 331 aaKnown RBP16.79■□□□□ 0.28
TRIM28-213ENST00000598355 HOXC13P31276 330 aa16.79■□□□□ 0.28
TRIM28-213ENST00000598355 SLC6A3Q01959 620 aa16.79■□□□□ 0.28
TRIM28-213ENST00000598355 DMWDQ09019 674 aa16.79■□□□□ 0.28
TRIM28-213ENST00000598355 OTUD1Q5VV17 481 aaPredicted RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms