RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 PDZD4Q76G19 769 aaPredicted RBP15.83■□□□□ 0.12
TRIM28-209ENST00000597423 SLC13A5Q86YT5 568 aaPredicted RBP15.83■□□□□ 0.12
TRIM28-209ENST00000597423 ATP6V0D2Q8N8Y2 350 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 RAPGEF5Q92565 580 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 PEBP4Q96S96 227 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 SNRNP25Q9BV90 132 aaKnown RBP15.83■□□□□ 0.12
TRIM28-209ENST00000597423 CARD6Q9BX69 1037 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 CALN1Q9BXU9 219 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 TKTL2Q9H0I9 626 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 OSBPL2Q9H1P3 480 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 ATXN3LQ9H3M9 355 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 PIDD1Q9HB75 910 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 WDR6Q9NNW5 1121 aaKnown RBP15.83■□□□□ 0.12
TRIM28-209ENST00000597423 ARHGEF38Q9NXL2 777 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 RCOR3Q9P2K3 495 aaPredicted RBP15.83■□□□□ 0.12
TRIM28-209ENST00000597423 CEP290O15078 2479 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 PLXNA4Q9HCM2 1894 aa15.82■□□□□ 0.12
TRIM28-209ENST00000597423 CCDC195A0A1B0GUA6 201 aa15.82■□□□□ 0.12
TRIM28-209ENST00000597423 PI4K2BG5E9Z4 385 aa15.82■□□□□ 0.12
TRIM28-209ENST00000597423 CCDC188H7C350 402 aa15.82■□□□□ 0.12
TRIM28-209ENST00000597423 RIOK3O14730 519 aaKnown RBP15.82■□□□□ 0.12
TRIM28-209ENST00000597423 MYL4P12829 197 aa15.82■□□□□ 0.12
TRIM28-209ENST00000597423 HDCP19113 662 aa15.82■□□□□ 0.12
TRIM28-209ENST00000597423 HTR7P34969 479 aa15.82■□□□□ 0.12
TRIM28-209ENST00000597423 HARS2P49590 506 aaKnown RBP15.82■□□□□ 0.12
TRIM28-209ENST00000597423 ATXN1P54253 815 aaKnown RBP15.82■□□□□ 0.12
TRIM28-209ENST00000597423 PITX1P78337 314 aaPredicted RBP15.82■□□□□ 0.12
TRIM28-209ENST00000597423 EIF4EBP2Q13542 120 aaPredicted RBP15.82■□□□□ 0.12
TRIM28-209ENST00000597423 DPYSL2Q16555 572 aa15.82■□□□□ 0.12
TRIM28-209ENST00000597423 ZC3H12AQ5D1E8 599 aaKnown RBP15.82■□□□□ 0.12
TRIM28-209ENST00000597423 OTUD1Q5VV17 481 aaPredicted RBP15.82■□□□□ 0.12
TRIM28-209ENST00000597423 TXNRD3NBQ6F5E7 133 aa15.82■□□□□ 0.12
TRIM28-209ENST00000597423 ZNF572Q7Z3I7 529 aaPredicted RBP15.82■□□□□ 0.12
TRIM28-209ENST00000597423 MIB1Q86YT6 1006 aa15.82■□□□□ 0.12
TRIM28-209ENST00000597423 CCDC185Q8N715 623 aa15.82■□□□□ 0.12
TRIM28-209ENST00000597423 TTC13Q8NBP0 860 aa15.82■□□□□ 0.12
TRIM28-209ENST00000597423 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.82■□□□□ 0.12
TRIM28-209ENST00000597423 CCSER2Q9H7U1 834 aa15.82■□□□□ 0.12
TRIM28-209ENST00000597423 SFXN1Q9H9B4 322 aa15.82■□□□□ 0.12
TRIM28-209ENST00000597423 NUDT5Q9UKK9 219 aa15.82■□□□□ 0.12
TRIM28-209ENST00000597423 TRAV19A0A0A6YYK7 116 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 EPOPA6NHQ4 379 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 KCNU1A8MYU2 1149 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 DAPK3O43293 454 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 CLUHO75153 1309 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 TBX18O95935 607 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 L1CAMP32004 1257 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 CDKN2BP42772 138 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 HCAR3P49019 387 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 EPHA5P54756 1037 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 TAZQ16635 292 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 RAB6CQ53S08 254 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 PPP6R3Q5H9R7 873 aaPredicted RBP15.81■□□□□ 0.12
TRIM28-209ENST00000597423 MFSD7Q6UXD7 560 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 ADGRD2Q7Z7M1 963 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 RFX6Q8HWS3 928 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 SPATA4Q8NEY3 305 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 FAM71BQ8TC56 605 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 PLD4Q96BZ4 506 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 SLC39A13Q96H72 371 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 BTN2A3PQ96KV6 586 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 C1orf74Q96LT6 269 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 RUNDC3BQ96NL0 473 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 EPAS1Q99814 870 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 DDX50Q9BQ39 737 aaKnown RBP15.81■□□□□ 0.12
TRIM28-209ENST00000597423 ZNF670Q9BS34 389 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 HEMGNQ9BXL5 484 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 LRRC3Q9BY71 257 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 ADAM33Q9BZ11 813 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 FRMD8P1Q9BZ68 369 aaPredicted RBP15.81■□□□□ 0.12
TRIM28-209ENST00000597423 RAB6CQ9H0N0 254 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 IGFLR1Q9H665 355 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 IL21Q9HBE4 155 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 PCDH18Q9HCL0 1135 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 TRPC7Q9HCX4 862 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 ZNF334Q9HCZ1 680 aaPredicted RBP15.81■□□□□ 0.12
TRIM28-209ENST00000597423 KLHL11Q9NVR0 708 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 DONSONQ9NYP3 566 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 CALCOCO1Q9P1Z2 691 aa15.81■□□□□ 0.12
TRIM28-209ENST00000597423 FEZ2Q9UHY8 353 aaPredicted RBP15.81■□□□□ 0.12
TRIM28-209ENST00000597423 RFXAPO00287 272 aa15.8■□□□□ 0.12
TRIM28-209ENST00000597423 COCHO43405 550 aa15.8■□□□□ 0.12
TRIM28-209ENST00000597423 RFPL2O75678 378 aa15.8■□□□□ 0.12
TRIM28-209ENST00000597423 OAS1P00973 400 aaKnown RBP15.8■□□□□ 0.12
TRIM28-209ENST00000597423 MBL2P11226 248 aaPredicted RBP15.8■□□□□ 0.12
TRIM28-209ENST00000597423 SLC11A2P49281 568 aa15.8■□□□□ 0.12
TRIM28-209ENST00000597423 ARSEP51690 589 aa15.8■□□□□ 0.12
TRIM28-209ENST00000597423 DPYSL3Q14195 570 aa15.8■□□□□ 0.12
TRIM28-209ENST00000597423 KAZNQ674X7 775 aa15.8■□□□□ 0.12
TRIM28-209ENST00000597423 LRRC31Q6UY01 552 aa15.8■□□□□ 0.12
TRIM28-209ENST00000597423 TMEM184AQ6ZMB5 413 aa15.8■□□□□ 0.12
TRIM28-209ENST00000597423 CYP4V2Q6ZWL3 525 aaPredicted RBP15.8■□□□□ 0.12
TRIM28-209ENST00000597423 BZW1Q7L1Q6 419 aaKnown RBP15.8■□□□□ 0.12
TRIM28-209ENST00000597423 TMC8Q8IU68 726 aa15.8■□□□□ 0.12
TRIM28-209ENST00000597423 HS6ST3Q8IZP7 471 aa15.8■□□□□ 0.12
TRIM28-209ENST00000597423 EFHBQ8N7U6 833 aa15.8■□□□□ 0.12
TRIM28-209ENST00000597423 AZIN2Q96A70 460 aa15.8■□□□□ 0.12
TRIM28-209ENST00000597423 ACSF2Q96CM8 615 aaPredicted RBP15.8■□□□□ 0.12
TRIM28-209ENST00000597423 RNF157Q96PX1 679 aa15.8■□□□□ 0.12
TRIM28-209ENST00000597423 DCLK3Q9C098 648 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms