RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 NTSR1P30989 418 aa15.93■□□□□ 0.14
TRIM28-203ENST00000593582 RPL34P49207 117 aaKnown RBP15.93■□□□□ 0.14
TRIM28-203ENST00000593582 ZNF445P59923 1031 aa15.93■□□□□ 0.14
TRIM28-203ENST00000593582 ARHGAP8P85298 464 aa15.93■□□□□ 0.14
TRIM28-203ENST00000593582 KCNJ12Q14500 433 aa15.93■□□□□ 0.14
TRIM28-203ENST00000593582 C11orf74Q86VG3 221 aa15.93■□□□□ 0.14
TRIM28-203ENST00000593582 FAM217AQ8IXS0 508 aa15.93■□□□□ 0.14
TRIM28-203ENST00000593582 CHPFQ8IZ52 775 aa15.93■□□□□ 0.14
TRIM28-203ENST00000593582 HMGB4Q8WW32 186 aa15.93■□□□□ 0.14
TRIM28-203ENST00000593582 FAM149B1Q96BN6 582 aa15.93■□□□□ 0.14
TRIM28-203ENST00000593582 RMDN1Q96DB5 314 aa15.93■□□□□ 0.14
TRIM28-203ENST00000593582 SLC4A5Q9BY07 1137 aa15.93■□□□□ 0.14
TRIM28-203ENST00000593582 ACP6Q9NPH0 428 aa15.93■□□□□ 0.14
TRIM28-203ENST00000593582 SEMA4GQ9NTN9 838 aa15.93■□□□□ 0.14
TRIM28-203ENST00000593582 SLC27A6Q9Y2P4 619 aa15.93■□□□□ 0.14
TRIM28-203ENST00000593582 KIAA1549LQ6ZVL6 1849 aa15.93■□□□□ 0.14
TRIM28-203ENST00000593582 TCRBV21S2A2A0A5A6 115 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 DCLK1O15075 740 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 ZBTB24O43167 697 aaPredicted RBP15.92■□□□□ 0.14
TRIM28-203ENST00000593582 FOXD2O60548 495 aaPredicted RBP15.92■□□□□ 0.14
TRIM28-203ENST00000593582 RHOBTB1O94844 696 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 HOXB2P14652 356 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 HNRNPLP14866 589 aaKnown RBP eCLIP15.92■□□□□ 0.14
TRIM28-203ENST00000593582 SDHBP21912 280 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 EEF1GP26641 437 aaKnown RBP15.92■□□□□ 0.14
TRIM28-203ENST00000593582 GBP1P32455 592 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 PTK2Q05397 1052 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 CSRP2Q16527 193 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 PLK5Q496M5 336 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 MPPE1Q53F39 396 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 TCP11X2Q5H9J9 407 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 MIIPQ5JXC2 388 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 ADGRF1Q5T601 910 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 EGFLAMQ63HQ2 1017 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 NUGGCQ68CJ6 796 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 UNC45BQ8IWX7 931 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 PGBD3Q8N328 593 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 P2RY11Q96G91 374 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 SLC2A11Q9BYW1 496 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 ARRDC1-AS1Q9H2J1 176 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 SIX2Q9NPC8 291 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 SAMSN1Q9NSI8 373 aaKnown RBP15.92■□□□□ 0.14
TRIM28-203ENST00000593582 DNAJC12Q9UKB3 198 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 INVSQ9Y283 1065 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 NFE2L3Q9Y4A8 694 aa15.92■□□□□ 0.14
TRIM28-203ENST00000593582 E5RJQ4 531 aa15.91■□□□□ 0.14
TRIM28-203ENST00000593582 CAPN9O14815 690 aa15.91■□□□□ 0.14
TRIM28-203ENST00000593582 EPN2O95208 641 aa15.91■□□□□ 0.14
TRIM28-203ENST00000593582 SLC11A2P49281 568 aa15.91■□□□□ 0.14
TRIM28-203ENST00000593582 TBX4P57082 545 aa15.91■□□□□ 0.14
TRIM28-203ENST00000593582 RING1Q06587 406 aa15.91■□□□□ 0.14
TRIM28-203ENST00000593582 PDCLQ13371 301 aa15.91■□□□□ 0.14
TRIM28-203ENST00000593582 BYSLQ13895 437 aaKnown RBP15.91■□□□□ 0.14
TRIM28-203ENST00000593582 RBM43Q6ZSC3 357 aaKnown RBP15.91■□□□□ 0.14
TRIM28-203ENST00000593582 ANKS1BQ7Z6G8 1248 aa15.91■□□□□ 0.14
TRIM28-203ENST00000593582 TMEM110Q86TL2 294 aa15.91■□□□□ 0.14
TRIM28-203ENST00000593582 ENOX1Q8TC92 643 aaKnown RBP15.91■□□□□ 0.14
TRIM28-203ENST00000593582 TMA16Q96EY4 203 aaKnown RBP15.91■□□□□ 0.14
TRIM28-203ENST00000593582 SPACA7Q96KW9 195 aa15.91■□□□□ 0.14
TRIM28-203ENST00000593582 SERPINB11Q96P15 392 aa15.91■□□□□ 0.14
TRIM28-203ENST00000593582 NOX5Q96PH1 765 aa15.91■□□□□ 0.14
TRIM28-203ENST00000593582 DUSP15Q9H1R2 295 aaPredicted RBP15.91■□□□□ 0.14
TRIM28-203ENST00000593582 CYTH4Q9UIA0 394 aa15.91■□□□□ 0.14
TRIM28-203ENST00000593582 STOML2Q9UJZ1 356 aa15.91■□□□□ 0.14
TRIM28-203ENST00000593582 HCN2Q9UL51 889 aa15.91■□□□□ 0.14
TRIM28-203ENST00000593582 PCDHGA5Q9Y5G8 931 aa15.91■□□□□ 0.14
TRIM28-203ENST00000593582 FOXN3O00409 490 aaPredicted RBP15.9■□□□□ 0.14
TRIM28-203ENST00000593582 PAPSS1O43252 624 aaPredicted RBP15.9■□□□□ 0.14
TRIM28-203ENST00000593582 TSPAN3O60637 253 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 IGLV3-27P01718 113 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 FYNP06241 537 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 KRT9P35527 623 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 WASP42768 502 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 BPIFB4P59827 614 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 NNTQ13423 1086 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 PUM1Q14671 1186 aaKnown RBP eCLIP15.9■□□□□ 0.14
TRIM28-203ENST00000593582 E2F5Q15329 346 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 RSPO4Q2I0M5 234 aaPredicted RBP15.9■□□□□ 0.14
TRIM28-203ENST00000593582 SASS6Q6UVJ0 657 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 PRR23CQ6ZRP0 262 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 BEND5Q7L4P6 421 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 OLIG1Q8TAK6 271 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 DQX1Q8TE96 717 aaKnown RBP15.9■□□□□ 0.14
TRIM28-203ENST00000593582 UCMAQ8WVF2 138 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 ACOX2Q99424 681 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 GABRG3Q99928 467 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 LHX5Q9H2C1 402 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 CACNA2D2Q9NY47 1150 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 AJAP1Q9UKB5 411 aaPredicted RBP15.9■□□□□ 0.14
TRIM28-203ENST00000593582 CDV3Q9UKY7 258 aaKnown RBP15.9■□□□□ 0.14
TRIM28-203ENST00000593582 PCDHGC3Q9UN70 934 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 NAALADL1Q9UQQ1 740 aa15.9■□□□□ 0.14
TRIM28-203ENST00000593582 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.9■□□□□ 0.14
TRIM28-203ENST00000593582 A0A1W2PQF6 199 aa15.89■□□□□ 0.13
TRIM28-203ENST00000593582 GFRA2O00451 464 aa15.89■□□□□ 0.13
TRIM28-203ENST00000593582 NPC1O15118 1278 aa15.89■□□□□ 0.13
TRIM28-203ENST00000593582 IRAK2O43187 625 aa15.89■□□□□ 0.13
TRIM28-203ENST00000593582 MBD3O95983 291 aa15.89■□□□□ 0.13
TRIM28-203ENST00000593582 TPM2P07951 284 aa15.89■□□□□ 0.13
TRIM28-203ENST00000593582 HOXD9P28356 352 aaPredicted RBP15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms