RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SMYD2Q9NRG4 433 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 KLHL42Q9P2K6 505 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 FZD10Q9ULW2 581 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 TRIM49D1C9J1S8 452 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 DGKIO75912 1065 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 KRT37O76014 449 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 TROVE2P10155 538 aaKnown RBP eCLIP10.43□□□□□ -0.74
VPS53-220ENST00000576149 GOT1P17174 413 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 AMPD1P23109 780 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 CRYBB1P53674 252 aaPredicted RBP10.43□□□□□ -0.74
VPS53-220ENST00000576149 SEMA5AQ13591 1074 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 PLEKHG4Q58EX7 1191 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 WLSQ5T9L3 541 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 UNC5AQ6ZN44 842 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 PSTKQ8IV42 348 aaKnown RBP10.43□□□□□ -0.74
VPS53-220ENST00000576149 DEFB106AQ8N104 65 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 PYROXD2Q8N2H3 581 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 TOP6BLQ8N6T0 577 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 ARRDC4Q8NCT1 418 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 SMG8Q8ND04 991 aaKnown RBP10.43□□□□□ -0.74
VPS53-220ENST00000576149 LENG1Q96BZ8 264 aaPredicted RBP10.43□□□□□ -0.74
VPS53-220ENST00000576149 FAM111AQ96PZ2 611 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 EBNA1BP2Q99848 306 aaKnown RBP10.43□□□□□ -0.74
VPS53-220ENST00000576149 DUSP16Q9BY84 665 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 NPHS2Q9NP85 383 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 RCOR3Q9P2K3 495 aaPredicted RBP10.43□□□□□ -0.74
VPS53-220ENST00000576149 IPPQ9Y573 584 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 PDCD11Q14690 1871 aaKnown RBP10.43□□□□□ -0.74
VPS53-220ENST00000576149 ZNF236Q9UL36 1845 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 HACD1B0YJ81 288 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 ARL4AP40617 200 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 ADIGQ0VDE8 80 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 MAP2K5Q13163 448 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 PREPLQ4J6C6 727 aaPredicted RBP10.42□□□□□ -0.74
VPS53-220ENST00000576149 LGSNQ5TDP6 509 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 HEATR6Q6AI08 1181 aaKnown RBP10.42□□□□□ -0.74
VPS53-220ENST00000576149 NLRP9Q7RTR0 991 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 FAM131BQ86XD5 332 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 CCDC33Q8N5R6 958 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 GSDMBQ8TAX9 411 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 TFB1MQ8WVM0 346 aaKnown RBP10.42□□□□□ -0.74
VPS53-220ENST00000576149 HTR3CQ8WXA8 447 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 APBB2Q92870 758 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 NT5C3BQ969T7 300 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 LRMDAQ9H2I8 198 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 XAB2Q9HCS7 855 aaKnown RBP10.42□□□□□ -0.74
VPS53-220ENST00000576149 ALG13Q9NP73 1137 aaKnown RBP10.42□□□□□ -0.74
VPS53-220ENST00000576149 FLRT1Q9NZU1 646 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 MFHAS1Q9Y4C4 1052 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 COPEO14579 308 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 DAB1O75553 588 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 T-ENOLP0DO92 83 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 VAV1P15498 845 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 LRPAP1P30533 357 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 SULT1E1P49888 294 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 SLC8A3P57103 927 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 MRPS5P82675 430 aaKnown RBP10.42□□□□□ -0.74
VPS53-220ENST00000576149 OVGP1Q12889 678 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 PRKD1Q15139 912 aaPredicted RBP10.42□□□□□ -0.74
VPS53-220ENST00000576149 OTUD1Q5VV17 481 aaPredicted RBP10.42□□□□□ -0.74
VPS53-220ENST00000576149 CDHR3Q6ZTQ4 885 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 PAQR9Q6ZVX9 377 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 BZW1Q7L1Q6 419 aaKnown RBP10.42□□□□□ -0.74
VPS53-220ENST00000576149 BNIPLQ7Z465 357 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 CEP57Q86XR8 500 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 MPP5Q8N3R9 675 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 KCTD13Q8WZ19 329 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 NDRG1Q92597 394 aaKnown RBP10.42□□□□□ -0.74
VPS53-220ENST00000576149 SRPK1Q96SB4 655 aaKnown RBP10.42□□□□□ -0.74
VPS53-220ENST00000576149 TSSK1BQ9BXA7 367 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 ARHGEF4Q9NR80 690 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 KANSL3Q9P2N6 904 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 CPA4Q9UI42 421 aa10.42□□□□□ -0.74
VPS53-220ENST00000576149 A0A0A0MRY4 1105 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 FAM159BA6NKW6 160 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 UGT1A9O60656 530 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 RFPL1O75677 317 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 BEST1O76090 585 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 TGDSO95455 350 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 IL1BP01584 269 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 MYL3P08590 195 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 FAM163BP0C2L3 166 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 CSH1P0DML2 217 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 CSH2P0DML3 217 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 NPR3P17342 541 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 PTPN1P18031 435 aaKnown RBP10.41□□□□□ -0.74
VPS53-220ENST00000576149 TARSP26639 723 aaKnown RBP10.41□□□□□ -0.74
VPS53-220ENST00000576149 NOS2P35228 1153 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 GRIA1P42261 906 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 SERPINB4P48594 390 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 CPT1AP50416 773 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 PARP6Q2NL67 630 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 DCAF6Q58WW2 860 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 ANKRD20A2Q5SQ80 823 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 ANKRD20A1Q5TYW2 823 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 ANKRD20A3Q5VUR7 823 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 TRMT10BQ6PF06 316 aaKnown RBP10.41□□□□□ -0.74
VPS53-220ENST00000576149 CYS1Q717R9 158 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 HS6ST3Q8IZP7 471 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 RFWD2Q8NHY2 731 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms