RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 PIWIL1Q96J94 861 aaKnown RBP22.1■■□□□ 1.13
VPS53-216ENST00000574029 PRDM16Q9HAZ2 1276 aa22.1■■□□□ 1.13
VPS53-216ENST00000574029 ITM2CQ9NQX7 267 aa22.1■■□□□ 1.13
VPS53-216ENST00000574029 CISHQ9NSE2 258 aa22.1■■□□□ 1.13
VPS53-216ENST00000574029 USP36Q9P275 1121 aaKnown RBP22.1■■□□□ 1.13
VPS53-216ENST00000574029 RALYQ9UKM9 306 aaKnown RBP22.1■■□□□ 1.13
VPS53-216ENST00000574029 MSRB2Q9Y3D2 182 aa22.1■■□□□ 1.13
VPS53-216ENST00000574029 H0Y626 953 aa22.09■■□□□ 1.13
VPS53-216ENST00000574029 TRIM16O95361 564 aa22.09■■□□□ 1.13
VPS53-216ENST00000574029 HMBSP08397 361 aa22.09■■□□□ 1.13
VPS53-216ENST00000574029 SLC14A1Q13336 389 aa22.09■■□□□ 1.13
VPS53-216ENST00000574029 HNRNPDQ14103 355 aaKnown RBP22.09■■□□□ 1.13
VPS53-216ENST00000574029 EDRF1Q3B7T1 1238 aa22.09■■□□□ 1.13
VPS53-216ENST00000574029 PLEKHG6Q3KR16 790 aa22.09■■□□□ 1.13
VPS53-216ENST00000574029 WDR45BQ5MNZ6 344 aa22.09■■□□□ 1.13
VPS53-216ENST00000574029 KRBA2Q6ZNG9 492 aa22.09■■□□□ 1.13
VPS53-216ENST00000574029 PIGZQ86VD9 579 aa22.09■■□□□ 1.13
VPS53-216ENST00000574029 RBBP8NLQ8NC74 664 aaPredicted RBP22.09■■□□□ 1.13
VPS53-216ENST00000574029 FBXL13Q8NEE6 735 aa22.09■■□□□ 1.13
VPS53-216ENST00000574029 UCMAQ8WVF2 138 aa22.09■■□□□ 1.13
VPS53-216ENST00000574029 MKRN2Q9H000 416 aaKnown RBP22.09■■□□□ 1.13
VPS53-216ENST00000574029 WSB2Q9NYS7 404 aaPredicted RBP22.09■■□□□ 1.13
VPS53-216ENST00000574029 MARCH2Q9P0N8 246 aa22.09■■□□□ 1.13
VPS53-216ENST00000574029 KLK13Q9UKR3 277 aa22.09■■□□□ 1.13
VPS53-216ENST00000574029 GNSP15586 552 aa22.08■■□□□ 1.13
VPS53-216ENST00000574029 MAOBP27338 520 aa22.08■■□□□ 1.13
VPS53-216ENST00000574029 YWHAGP61981 247 aaKnown RBP eCLIP22.08■■□□□ 1.13
VPS53-216ENST00000574029 ANKS1BQ7Z6G8 1248 aa22.08■■□□□ 1.13
VPS53-216ENST00000574029 DENND1CQ8IV53 801 aa22.08■■□□□ 1.13
VPS53-216ENST00000574029 FAM217AQ8IXS0 508 aa22.08■■□□□ 1.13
VPS53-216ENST00000574029 ANKRD52Q8NB46 1076 aa22.08■■□□□ 1.13
VPS53-216ENST00000574029 DNASE2BQ8WZ79 361 aa22.08■■□□□ 1.13
VPS53-216ENST00000574029 TOE1Q96GM8 510 aaKnown RBP22.08■■□□□ 1.13
VPS53-216ENST00000574029 ARID3AQ99856 593 aa22.08■■□□□ 1.13
VPS53-216ENST00000574029 RAB20Q9NX57 234 aa22.08■■□□□ 1.13
VPS53-216ENST00000574029 STRIP2Q9ULQ0 834 aa22.08■■□□□ 1.13
VPS53-216ENST00000574029 CLEC4EQ9ULY5 219 aa22.08■■□□□ 1.13
VPS53-216ENST00000574029 ZDHHC9Q9Y397 364 aa22.08■■□□□ 1.13
VPS53-216ENST00000574029 NFE2L3Q9Y4A8 694 aa22.08■■□□□ 1.13
VPS53-216ENST00000574029 CHD6Q8TD26 2715 aa22.08■■□□□ 1.13
VPS53-216ENST00000574029 CKAP5Q14008 2032 aa22.07■■□□□ 1.12
VPS53-216ENST00000574029 FAM221BA6H8Z2 402 aa22.07■■□□□ 1.12
VPS53-216ENST00000574029 CYBBP04839 570 aa22.07■■□□□ 1.12
VPS53-216ENST00000574029 RDXP35241 583 aaKnown RBP22.07■■□□□ 1.12
VPS53-216ENST00000574029 MXI1P50539 228 aa22.07■■□□□ 1.12
VPS53-216ENST00000574029 EIF4HQ15056 248 aaKnown RBP22.07■■□□□ 1.12
VPS53-216ENST00000574029 E2F5Q15329 346 aa22.07■■□□□ 1.12
VPS53-216ENST00000574029 PM20D1Q6GTS8 502 aa22.07■■□□□ 1.12
VPS53-216ENST00000574029 CADM4Q8NFZ8 388 aa22.07■■□□□ 1.12
VPS53-216ENST00000574029 SLC2A11Q9BYW1 496 aa22.07■■□□□ 1.12
VPS53-216ENST00000574029 ELOVL2Q9NXB9 296 aa22.07■■□□□ 1.12
VPS53-216ENST00000574029 A0A1W2PQ27 194 aa22.06■■□□□ 1.12
VPS53-216ENST00000574029 A0A1W2PQ64 194 aa22.06■■□□□ 1.12
VPS53-216ENST00000574029 SLC12A8A0AV02 714 aa22.06■■□□□ 1.12
VPS53-216ENST00000574029 KCNJ18B7U540 433 aa22.06■■□□□ 1.12
VPS53-216ENST00000574029 STX10O60499 249 aa22.06■■□□□ 1.12
VPS53-216ENST00000574029 TPMTP51580 245 aa22.06■■□□□ 1.12
VPS53-216ENST00000574029 TKTL1P51854 596 aa22.06■■□□□ 1.12
VPS53-216ENST00000574029 ZNF234Q14588 700 aa22.06■■□□□ 1.12
VPS53-216ENST00000574029 ZNF423Q2M1K9 1284 aa22.06■■□□□ 1.12
VPS53-216ENST00000574029 RSRC2Q7L4I2 434 aaKnown RBP22.06■■□□□ 1.12
VPS53-216ENST00000574029 BHLHA9Q7RTU4 235 aa22.06■■□□□ 1.12
VPS53-216ENST00000574029 TMPRSS6Q8IU80 811 aa22.06■■□□□ 1.12
VPS53-216ENST00000574029 ZCCHC14Q8WYQ9 949 aaKnown RBP22.06■■□□□ 1.12
VPS53-216ENST00000574029 TATDN2Q93075 761 aa22.06■■□□□ 1.12
VPS53-216ENST00000574029 PLD4Q96BZ4 506 aa22.06■■□□□ 1.12
VPS53-216ENST00000574029 GPR174Q9BXC1 333 aa22.06■■□□□ 1.12
VPS53-216ENST00000574029 ZDHHC5Q9C0B5 715 aa22.06■■□□□ 1.12
VPS53-216ENST00000574029 GOLPH3LQ9H4A5 285 aa22.06■■□□□ 1.12
VPS53-216ENST00000574029 A0A1B0GTW7 788 aa22.05■■□□□ 1.12
VPS53-216ENST00000574029 SRRM3A6NNA2 597 aaPredicted RBP22.05■■□□□ 1.12
VPS53-216ENST00000574029 SH3BP5O60239 455 aa22.05■■□□□ 1.12
VPS53-216ENST00000574029 SYNCRIPO60506 623 aaKnown RBP22.05■■□□□ 1.12
VPS53-216ENST00000574029 ZBED1O96006 694 aa22.05■■□□□ 1.12
VPS53-216ENST00000574029 IGLV3-19P01714 112 aa22.05■■□□□ 1.12
VPS53-216ENST00000574029 NCAM1P13591 858 aa22.05■■□□□ 1.12
VPS53-216ENST00000574029 OXTRP30559 389 aa22.05■■□□□ 1.12
VPS53-216ENST00000574029 COPAP53621 1224 aa22.05■■□□□ 1.12
VPS53-216ENST00000574029 SLC8A3P57103 927 aa22.05■■□□□ 1.12
VPS53-216ENST00000574029 GRIK2Q13002 908 aa22.05■■□□□ 1.12
VPS53-216ENST00000574029 TRIP4Q15650 581 aaPredicted RBP22.05■■□□□ 1.12
VPS53-216ENST00000574029 TMEM215Q68D42 235 aa22.05■■□□□ 1.12
VPS53-216ENST00000574029 RAB44Q7Z6P3 723 aaPredicted RBP22.05■■□□□ 1.12
VPS53-216ENST00000574029 DDI1Q8WTU0 396 aa22.05■■□□□ 1.12
VPS53-216ENST00000574029 SIPA1Q96FS4 1042 aa22.05■■□□□ 1.12
VPS53-216ENST00000574029 EEF2KMTQ96G04 330 aa22.05■■□□□ 1.12
VPS53-216ENST00000574029 CAMK1GQ96NX5 476 aa22.05■■□□□ 1.12
VPS53-216ENST00000574029 ASPMQ8IZT6 3477 aa22.04■■□□□ 1.12
VPS53-216ENST00000574029 MEI4A8MW99 385 aa22.04■■□□□ 1.12
VPS53-216ENST00000574029 TIMM44O43615 452 aa22.04■■□□□ 1.12
VPS53-216ENST00000574029 ZNF202O95125 648 aa22.04■■□□□ 1.12
VPS53-216ENST00000574029 EPB41P11171 864 aaKnown RBP22.04■■□□□ 1.12
VPS53-216ENST00000574029 PRKCHP24723 683 aa22.04■■□□□ 1.12
VPS53-216ENST00000574029 TRIP6Q15654 476 aaKnown RBP22.04■■□□□ 1.12
VPS53-216ENST00000574029 SMYD4Q8IYR2 804 aaPredicted RBP22.04■■□□□ 1.12
VPS53-216ENST00000574029 CHCHD4Q8N4Q1 142 aa22.04■■□□□ 1.12
VPS53-216ENST00000574029 PRCCQ92733 491 aaPredicted RBP22.04■■□□□ 1.12
VPS53-216ENST00000574029 ULBP1Q9BZM6 244 aa22.04■■□□□ 1.12
VPS53-216ENST00000574029 OLA1Q9NTK5 396 aaKnown RBP22.04■■□□□ 1.12
VPS53-216ENST00000574029 CACNA1EQ15878 2313 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms