RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ASIC3Q9UHC3 531 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 FBXW11Q9UKB1 542 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 RWDD3Q9Y3V2 267 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 INSL6Q9Y581 213 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 WASF2Q9Y6W5 498 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 MKI67P46013 3256 aaKnown RBP8.27□□□□□ -1.09
VPS39-213ENST00000570062 FAM92AA1XBS5 289 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 A6NNZ2 444 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 I3L4J1 428 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 TNFRSF10BO14763 440 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 MTSS1O43312 755 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 HCRTO43612 131 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 GRAP2O75791 330 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 BEST1O76090 585 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 STK10O94804 968 aaKnown RBP8.27□□□□□ -1.09
VPS39-213ENST00000570062 ITGB1P05556 798 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 USP17L7P0C7H9 530 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 HAPLN1P10915 354 aaPredicted RBP8.27□□□□□ -1.09
VPS39-213ENST00000570062 MX2P20592 715 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 YWHAQP27348 245 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 IL1R2P27930 398 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 L1CAMP32004 1257 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 CCR1P32246 355 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 SERPINB6P35237 376 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 ADRA1BP35368 520 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 ADCY8P40145 1251 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 CARSP49589 748 aaKnown RBP8.27□□□□□ -1.09
VPS39-213ENST00000570062 CXCR3P49682 368 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 SLC5A3P53794 718 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 YWHAGP61981 247 aaKnown RBP eCLIP8.27□□□□□ -1.09
VPS39-213ENST00000570062 FAM193AP78312 1265 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 ZNF33AQ06730 810 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 PLD1Q13393 1074 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 DPYSL3Q14195 570 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 PPP2R5DQ14738 602 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 LRRC26Q2I0M4 334 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 C15orf59Q2T9L4 293 aaPredicted RBP8.27□□□□□ -1.09
VPS39-213ENST00000570062 TUBB8Q3ZCM7 444 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 ANKRD20A8PQ5CZ79 823 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 KCNT1Q5JUK3 1230 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 KAZNQ674X7 775 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 SLC9A4Q6AI14 798 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 KCNT2Q6UVM3 1135 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 LRIG3Q6UXM1 1119 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 PPP1R21Q6ZMI0 780 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 DENND5BQ6ZUT9 1274 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 TRMT10CQ7L0Y3 403 aaKnown RBP8.27□□□□□ -1.09
VPS39-213ENST00000570062 DDX53Q86TM3 631 aaKnown RBP8.27□□□□□ -1.09
VPS39-213ENST00000570062 LRRTM3Q86VH5 581 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 LRRC49Q8IUZ0 686 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 CDKL3Q8IVW4 592 aaPredicted RBP8.27□□□□□ -1.09
VPS39-213ENST00000570062 KRT222Q8N1A0 295 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 TMEM130Q8N3G9 435 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 LZTR1Q8N653 840 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 ALLCQ8N6M5 410 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 SLC35B2Q8TB61 432 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 C1orf54Q8WWF1 131 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 CASKIN2Q8WXE0 1202 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 SERPINB11Q96P15 392 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 HAPLN3Q96S86 360 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 KCNK16Q96T55 309 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 YME1L1Q96TA2 773 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 HTATIP2Q9BUP3 242 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 HERC2P3Q9BVR0 1158 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 GPR62Q9BZJ7 368 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 OSBPL2Q9H1P3 480 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 EPC1Q9H2F5 836 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 DHX35Q9H5Z1 703 aaKnown RBP8.27□□□□□ -1.09
VPS39-213ENST00000570062 FAM204AQ9H8W3 233 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 PCDH9Q9HC56 1237 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 PCDH18Q9HCL0 1135 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 PRDM5Q9NQX1 630 aaPredicted RBP8.27□□□□□ -1.09
VPS39-213ENST00000570062 TLR8Q9NR97 1041 aaKnown RBP8.27□□□□□ -1.09
VPS39-213ENST00000570062 MARCH5Q9NX47 278 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 ABI2Q9NYB9 513 aaPredicted RBP8.27□□□□□ -1.09
VPS39-213ENST00000570062 MTRRQ9UBK8 725 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 AFF4Q9UHB7 1163 aaKnown RBP8.27□□□□□ -1.09
VPS39-213ENST00000570062 FZD10Q9ULW2 581 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 NFU1Q9UMS0 254 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 AP4E1Q9UPM8 1137 aa8.27□□□□□ -1.09
VPS39-213ENST00000570062 TRIP12Q14669 1992 aaPredicted RBP8.27□□□□□ -1.09
VPS39-213ENST00000570062 FAM170AA1A519 330 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 BCLAF3A2AJT9 711 aaKnown RBP8.26□□□□□ -1.09
VPS39-213ENST00000570062 GOLGA6BA6NDN3 693 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 GOLGA6L10A6NI86 522 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 YJEFN3A6XGL0 299 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 E7ENQ6 273 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 PI4K2BG5E9Z4 385 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 PIK3R2O00459 728 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 PPP1R12AO14974 1030 aaPredicted RBP8.26□□□□□ -1.09
VPS39-213ENST00000570062 CAPN5O15484 640 aaPredicted RBP8.26□□□□□ -1.09
VPS39-213ENST00000570062 DAPK3O43293 454 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 UPP2O95045 317 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 EFEMP2O95967 443 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 KRT14P02533 472 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 URODP06132 367 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 CSH1P0DML2 217 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 CSH2P0DML3 217 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 RARGP13631 454 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 KRT10P13645 584 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms