RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ZC3H12AQ5D1E8 599 aaKnown RBP20.36■□□□□ 0.85
CLN3-225ENST00000566824 ZNF687Q8N1G0 1237 aa20.36■□□□□ 0.85
CLN3-225ENST00000566824 PBXIP1Q96AQ6 731 aa20.36■□□□□ 0.85
CLN3-225ENST00000566824 TBCBQ99426 244 aa20.36■□□□□ 0.85
CLN3-225ENST00000566824 NPY6RQ99463 290 aa20.36■□□□□ 0.85
CLN3-225ENST00000566824 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.36■□□□□ 0.85
CLN3-225ENST00000566824 TBC1D14Q9P2M4 693 aa20.36■□□□□ 0.85
CLN3-225ENST00000566824 XPO7Q9UIA9 1087 aaKnown RBP20.36■□□□□ 0.85
CLN3-225ENST00000566824 NENFQ9UMX5 172 aa20.36■□□□□ 0.85
CLN3-225ENST00000566824 BZW2Q9Y6E2 419 aaKnown RBP20.36■□□□□ 0.85
CLN3-225ENST00000566824 ATG2BQ96BY7 2078 aa20.36■□□□□ 0.85
CLN3-225ENST00000566824 GPR37L1O60883 481 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 NFATC1O95644 943 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 RFC1P35251 1148 aaPredicted RBP20.35■□□□□ 0.85
CLN3-225ENST00000566824 ATXN1P54253 815 aaKnown RBP20.35■□□□□ 0.85
CLN3-225ENST00000566824 GSCP56915 257 aaPredicted RBP20.35■□□□□ 0.85
CLN3-225ENST00000566824 CDK17Q00537 523 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 PRKCQQ04759 706 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 MESP2Q0VG99 397 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 ASTE1Q2TB18 679 aaPredicted RBP20.35■□□□□ 0.85
CLN3-225ENST00000566824 PPP1R15BQ5SWA1 713 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 C12orf40Q86WS4 652 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 DRC7Q8IY82 874 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 CPA6Q8N4T0 437 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 NT5C3BQ969T7 300 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 MYEOVQ96EZ4 313 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 CFAP57Q96MR6 1250 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 SERPINB11Q96P15 392 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 TRIM62Q9BVG3 475 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 FAM204AQ9H8W3 233 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 DDIT4Q9NX09 232 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 TLR6Q9Y2C9 796 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 KMT2EQ8IZD2 1858 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 KIAA1549LQ6ZVL6 1849 aa20.35■□□□□ 0.85
CLN3-225ENST00000566824 RTN2O75298 545 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 GZMAP12544 262 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 TARSP26639 723 aaKnown RBP20.34■□□□□ 0.85
CLN3-225ENST00000566824 SLC6A11P48066 632 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 SULT1E1P49888 294 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 NME3Q13232 169 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 SH3PXD2AQ5TCZ1 1133 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 NADSYN1Q6IA69 706 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 TPGS1Q6ZTW0 290 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 C3orf20Q8ND61 904 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 RXFP2Q8WXD0 754 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 OTUB2Q96DC9 234 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 DCLK3Q9C098 648 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 ISCUQ9H1K1 167 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 MFSD1Q9H3U5 465 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 C8orf33Q9H7E9 229 aaPredicted RBP20.34■□□□□ 0.85
CLN3-225ENST00000566824 ANLNQ9NQW6 1124 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 SPHK2Q9NRA0 654 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 PIGVQ9NUD9 493 aa20.34■□□□□ 0.85
CLN3-225ENST00000566824 NDRG2Q9UN36 371 aaKnown RBP20.34■□□□□ 0.85
CLN3-225ENST00000566824 KANSL1LA0AUZ9 987 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 ANTXRLA6NF34 631 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 C2CD4BA6NLJ0 364 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 I6L893 689 aaPredicted RBP20.33■□□□□ 0.85
CLN3-225ENST00000566824 M0QYT0 321 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 GFRA2O00451 464 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 STK25O00506 426 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 TSPAN3O60637 253 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 TPM1P09493 284 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 ADH5P11766 374 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 SLC6A4P31645 630 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 OPRD1P41143 372 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 RPL7AP62424 266 aaKnown RBP20.33■□□□□ 0.85
CLN3-225ENST00000566824 GFPT1Q06210 699 aaPredicted RBP20.33■□□□□ 0.85
CLN3-225ENST00000566824 RING1Q06587 406 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 NNTQ13423 1086 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 FZD5Q13467 585 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 PON2Q15165 354 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 C15orf59Q2T9L4 293 aaPredicted RBP20.33■□□□□ 0.85
CLN3-225ENST00000566824 CCDC14Q49A88 953 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 TMEM31Q5JXX7 168 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 BNIPLQ7Z465 357 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 BMP8AQ7Z5Y6 402 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 RALGPS2Q86X27 583 aaPredicted RBP20.33■□□□□ 0.85
CLN3-225ENST00000566824 FAM217AQ8IXS0 508 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 FAM3CQ92520 227 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 BHMTQ93088 406 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 LRFN3Q9BTN0 628 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 TRIM7Q9C029 511 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 LTB4R2Q9NPC1 389 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 TMPRSS4Q9NRS4 437 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 WDR35Q9P2L0 1181 aa20.33■□□□□ 0.85
CLN3-225ENST00000566824 ZNF318Q5VUA4 2279 aa20.33■□□□□ 0.84
CLN3-225ENST00000566824 SIGLEC16A6NMB1 481 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 TRIM24O15164 1050 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 MOCS2O96007 188 aaPredicted RBP20.32■□□□□ 0.84
CLN3-225ENST00000566824 KRT3P12035 628 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 GLULP15104 373 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 HARS2P49590 506 aaKnown RBP20.32■□□□□ 0.84
CLN3-225ENST00000566824 GALK1P51570 392 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 SGSHP51688 502 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 MLLT6P55198 1093 aaPredicted RBP20.32■□□□□ 0.84
CLN3-225ENST00000566824 OGDHQ02218 1023 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 MAPK8IP2Q13387 824 aaPredicted RBP20.32■□□□□ 0.84
CLN3-225ENST00000566824 UBXN2BQ14CS0 331 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 SLC25A52Q3SY17 297 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms