RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 CD19P15391 556 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 GJA1P17302 382 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 PCSK1P29120 753 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 LHX1P48742 406 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 NDST1P52848 882 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 NRLP54845 237 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 KLHL30Q0D2K2 578 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 INCA1Q0VD86 236 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 ORC1Q13415 861 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 UNC93AQ86WB7 457 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 OSTM1Q86WC4 334 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 TMC8Q8IU68 726 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 FAM71AQ8IYT1 594 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 UBR7Q8N806 425 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 ATAD1Q8NBU5 361 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 SPPL2BQ8TCT7 592 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 CSGALNACT1Q8TDX6 532 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 KBTBD7Q8WVZ9 684 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 FAM3CQ92520 227 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 SYN2Q92777 582 aaPredicted RBP12.8□□□□□ -0.36
UPF3A-210ENST00000493727 PSMG2Q969U7 264 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 ZSWIM3Q96MP5 696 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 GCNAQ96QF7 691 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 PANX2Q96RD6 677 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 NT5C1AQ9BXI3 368 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 LRRC3Q9BY71 257 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 PDCL3Q9H2J4 239 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 DEF6Q9H4E7 631 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 C8orf33Q9H7E9 229 aaPredicted RBP12.8□□□□□ -0.36
UPF3A-210ENST00000493727 SEPT11Q9NVA2 429 aaKnown RBP12.8□□□□□ -0.36
UPF3A-210ENST00000493727 DDX43Q9NXZ2 648 aaKnown RBP12.8□□□□□ -0.36
UPF3A-210ENST00000493727 OBP2AQ9NY56 170 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 HMGXB4Q9UGU5 601 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 ATXN7L1Q9ULK2 861 aaPredicted RBP12.8□□□□□ -0.36
UPF3A-210ENST00000493727 PIAS3Q9Y6X2 628 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 LAMA1P25391 3075 aa12.8□□□□□ -0.36
UPF3A-210ENST00000493727 SLC30A4O14863 429 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 THAP12O43422 761 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 SERPING1P05155 500 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 PDGFRBP09619 1106 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 CDC25CP30307 473 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 GNA15P30679 374 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 VIPR2P41587 438 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 CCR3P51677 355 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 TSPY1Q01534 308 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 FCHO2Q0JRZ9 810 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 TAF12Q16514 161 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 LAIR1Q6GTX8 287 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 DNAJB7Q7Z6W7 309 aaPredicted RBP12.79□□□□□ -0.36
UPF3A-210ENST00000493727 VPS36Q86VN1 386 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 CCDC112Q8NEF3 446 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 NETO1Q8TDF5 533 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 COL26A1Q96A83 441 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 ABHD17AQ96GS6 310 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 MYO19Q96H55 970 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 TMEM176AQ96HP8 235 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 TNIP3Q96KP6 325 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 BAG1Q99933 345 aaPredicted RBP12.79□□□□□ -0.36
UPF3A-210ENST00000493727 ATXN3LQ9H3M9 355 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 AIPL1Q9NZN9 384 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 NDRG2Q9UN36 371 aaKnown RBP12.79□□□□□ -0.36
UPF3A-210ENST00000493727 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.79□□□□□ -0.36
UPF3A-210ENST00000493727 NCANO14594 1321 aa12.79□□□□□ -0.36
UPF3A-210ENST00000493727 KIF26AQ9ULI4 1882 aaPredicted RBP12.78□□□□□ -0.36
UPF3A-210ENST00000493727 LRP3O75074 770 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 PAEPP09466 180 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 SKILP12757 684 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 LORP23490 312 aaPredicted RBP12.78□□□□□ -0.36
UPF3A-210ENST00000493727 ACAT1P24752 427 aaKnown RBP12.78□□□□□ -0.36
UPF3A-210ENST00000493727 GABRR2P28476 465 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 ZNF132P52740 706 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 RAD23BP54727 409 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 PSMC1P62191 440 aaKnown RBP12.78□□□□□ -0.36
UPF3A-210ENST00000493727 TNP2Q05952 138 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 SPEM2Q0P670 501 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 LRRC32Q14392 662 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 MGAT5BQ3V5L5 792 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 ARHGAP29Q52LW3 1261 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 GPR158Q5T848 1215 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 TAF3Q5VWG9 929 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 E4F1Q66K89 784 aaPredicted RBP12.78□□□□□ -0.36
UPF3A-210ENST00000493727 CAPN12Q6ZSI9 719 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 LIMS2Q7Z4I7 341 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 ACOT1Q86TX2 421 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 SLC47A2Q86VL8 602 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 ARID3BQ8IVW6 561 aaPredicted RBP12.78□□□□□ -0.36
UPF3A-210ENST00000493727 DCP1BQ8IZD4 617 aaKnown RBP12.78□□□□□ -0.36
UPF3A-210ENST00000493727 OR10T2Q8NGX3 314 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 TRIM44Q96DX7 344 aaPredicted RBP12.78□□□□□ -0.36
UPF3A-210ENST00000493727 HSH2DQ96JZ2 352 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 HEXIM2Q96MH2 286 aaKnown RBP12.78□□□□□ -0.36
UPF3A-210ENST00000493727 TWNKQ96RR1 684 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 SYT15Q9BQS2 421 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.78□□□□□ -0.36
UPF3A-210ENST00000493727 ELOVL4Q9GZR5 314 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 ZCWPW1Q9H0M4 648 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 CDH9Q9ULB4 789 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 CNTN6Q9UQ52 1028 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 BZW2Q9Y6E2 419 aaKnown RBP12.78□□□□□ -0.36
UPF3A-210ENST00000493727 OBSL1O75147 1896 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms