RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 BCO2Q9BYV7 579 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 CXorf49A8MYA2 514 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 CCL22O00626 93 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 SP100P23497 879 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 DNAJB2P25686 324 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 KLRC2P26717 231 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 ALDH3A1P30838 453 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 GRK4P32298 578 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 MMP13P45452 471 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 CACNA2D1P54289 1103 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 POLNQ7Z5Q5 900 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 ANKRD52Q8NB46 1076 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 OR52K1Q8NGK4 314 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 RMDN2Q96LZ7 410 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 CCT8L1PA6NM43 557 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 A8MUI8 341 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 FAM72CH0Y354 149 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 SHOX2O60902 331 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 DNAJC6O75061 913 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 GPR32O75388 356 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 TADA2AO75478 443 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 KCNA4P22459 653 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 SCTRP47872 440 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 GATMP50440 423 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 SLC39A12Q504Y0 691 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 TIGD5Q53EQ6 642 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 FAM72AQ5TYM5 149 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 FAM72DQ6L9T8 149 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 FAM72BQ86X60 149 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 SPATA2LQ8IUW3 424 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 TRIB2Q92519 343 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 PPARGC1AQ9UBK2 798 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 PQBP1O60828 265 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 TBX18O95935 607 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 IRF1P10914 325 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 CDC25CP30307 473 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 WDR4P57081 412 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 GPX6P59796 221 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 MAXP61244 160 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 KCNJ2P63252 427 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 POU6F1Q14863 301 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 SYDE1Q6ZW31 735 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 CROCCP2Q86T23 111 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 C3orf58Q8NDZ4 430 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 GIPC2Q8TF65 315 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 TFB1MQ8WVM0 346 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 EMID1Q96A84 441 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 ERLEC1Q96DZ1 483 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 CSPG4P5Q96PW8 444 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 ADAMTS10Q9H324 1103 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 SLC40A1Q9NP59 571 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 L3MBTL1Q9Y468 752 aa14.2□□□□□ -0.14
CCDC88A-211ENST00000471947 ARL5CA6NH57 179 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 NPR3P17342 541 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 RPL10AP62906 217 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 KDSRQ06136 332 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 EFEMP1Q12805 493 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 SLC10A2Q12908 348 aaPredicted RBP14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 TRIM68Q6AZZ1 485 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 TLCD1Q96CP7 247 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 LHX5Q9H2C1 402 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 ZFATQ9P243 1243 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 PFKMP08237 780 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 PIRTP0C851 137 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 ERCC2P18074 760 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 TYK2P29597 1187 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 GPR15P49685 360 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 MRPS6P82932 125 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 OASLQ15646 514 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 NXNQ6DKJ4 435 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 PPP1R2P3Q6NXS1 205 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 OLFML1Q6UWY5 402 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 ARID3BQ8IVW6 561 aaPredicted RBP14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 MYLPFQ96A32 169 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 PAK5Q9P286 719 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 IQANK1A0A1B0GTG1 560 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 MT-CO1P00395 513 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 F2P00734 622 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 TROVE2P10155 538 aaKnown RBP eCLIP14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 GTF2A1P52655 376 aaPredicted RBP14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 OVOS1Q6IE37 1185 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 SLC35B2Q8TB61 432 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 MCRS1Q96EZ8 462 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 ROPN1BQ9BZX4 212 aaPredicted RBP14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 ROPN1Q9HAT0 212 aaPredicted RBP14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 PIGVQ9NUD9 493 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 SCN1AP35498 2009 aa14.19□□□□□ -0.14
CCDC88A-211ENST00000471947 H3BRJ5 948 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 NEMP1O14524 444 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 TSPY1Q01534 308 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 EFHC1Q5JVL4 640 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 KIAA1841Q6NSI8 718 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 TMCO2Q7Z6W1 182 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 CMC1Q7Z7K0 106 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 TTC25Q96NG3 672 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 KATNAL1Q9BW62 490 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 LRFN2Q9ULH4 789 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 KRT37O76014 449 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 HNRNPH1P31943 449 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 POU5F1BQ06416 359 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms