RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 GP1BAP07359 652 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 KRT19P08727 400 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 LPOP22079 712 aaPredicted RBP5.45□□□□□ -1.54
HMGB1-207ENST00000468384 ALAS2P22557 587 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 IL4RP24394 825 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 HSD3B2P26439 372 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 HOXA13P31271 388 aaPredicted RBP5.45□□□□□ -1.54
HMGB1-207ENST00000468384 MLH1P40692 756 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 GPC3P51654 580 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 STAT5BP51692 787 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 GHRHRQ02643 423 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 SFSWAPQ12872 951 aaKnown RBP5.45□□□□□ -1.54
HMGB1-207ENST00000468384 PDCD2Q16342 344 aaPredicted RBP5.45□□□□□ -1.54
HMGB1-207ENST00000468384 DEFB109BQ30KR1 87 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 KRTAP24-1Q3LI83 254 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 NADK2Q4G0N4 442 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 KIAA1324Q6UXG2 1013 aaKnown RBP5.45□□□□□ -1.54
HMGB1-207ENST00000468384 NLRP8Q86W28 1048 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 CCNJLQ8IV13 435 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 MAPK15Q8TD08 544 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 ATP2A3Q93084 1043 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 C19orf60Q96EN9 201 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 MRGPRX1Q96LB2 322 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 SCLT1Q96NL6 688 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 RANBP9Q96S59 729 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 SRPK1Q96SB4 655 aaKnown RBP5.45□□□□□ -1.54
HMGB1-207ENST00000468384 PAAF1Q9BRP4 392 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 TRIM55Q9BYV6 548 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 LRRCC1Q9C099 1032 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 UBN1Q9NPG3 1134 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 SIRPGQ9P1W8 387 aa5.45□□□□□ -1.54
HMGB1-207ENST00000468384 MYO18AQ92614 2054 aaKnown RBP5.44□□□□□ -1.54
HMGB1-207ENST00000468384 TCRBV5S4A2TA0A5A2 114 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 ZNF891A8MT65 544 aaPredicted RBP5.44□□□□□ -1.54
HMGB1-207ENST00000468384 KCNJ18B7U540 433 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 IPO5O00410 1097 aaKnown RBP5.44□□□□□ -1.54
HMGB1-207ENST00000468384 ADAMTS3O15072 1205 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 VILLO15195 856 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 NKX2-8O15522 239 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 KRT86O43790 486 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 KIF4AO95239 1232 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 KAT7O95251 611 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 RLBP1P12271 317 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 CKMT1AP12532 417 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 KCNA2P16389 499 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 TGM2P21980 687 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 UGT1A5P35504 534 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 WASP42768 502 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 ARRB1P49407 418 aaPredicted RBP5.44□□□□□ -1.54
HMGB1-207ENST00000468384 TFAP4Q01664 338 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 ELAVL2Q12926 359 aaKnown RBP5.44□□□□□ -1.54
HMGB1-207ENST00000468384 CAMK2GQ13555 558 aaPredicted RBP5.44□□□□□ -1.54
HMGB1-207ENST00000468384 SNAP47Q5SQN1 464 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 PCNX4Q63HM2 1172 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 SLC8B1Q6J4K2 584 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 RBM44Q6ZP01 1051 aaKnown RBP5.44□□□□□ -1.54
HMGB1-207ENST00000468384 NCCRP1Q6ZVX7 275 aaPredicted RBP5.44□□□□□ -1.54
HMGB1-207ENST00000468384 TRMT11Q7Z4G4 463 aaKnown RBP5.44□□□□□ -1.54
HMGB1-207ENST00000468384 GOLM1Q8NBJ4 401 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 WFDC11Q8NEX6 87 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 IPO4Q8TEX9 1081 aaKnown RBP5.44□□□□□ -1.54
HMGB1-207ENST00000468384 JPH3Q8WXH2 748 aaPredicted RBP5.44□□□□□ -1.54
HMGB1-207ENST00000468384 NRGNQ92686 78 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 USP13Q92995 863 aaPredicted RBP5.44□□□□□ -1.54
HMGB1-207ENST00000468384 ARRDC3Q96B67 414 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 ANAPC16Q96DE5 110 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 YTHDC1Q96MU7 727 aaKnown RBP5.44□□□□□ -1.54
HMGB1-207ENST00000468384 MAP7D2Q96T17 732 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 MENTQ9BUN1 341 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 SLC46A2Q9BY10 475 aa5.44□□□□□ -1.54
HMGB1-207ENST00000468384 ACE2Q9BYF1 805 aaPredicted RBP5.44□□□□□ -1.54
HMGB1-207ENST00000468384 DUS2Q9NX74 493 aaKnown RBP5.44□□□□□ -1.54
HMGB1-207ENST00000468384 APODP05090 189 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 FAM157BP0CG42 384 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 PRKAR1AP10644 381 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 TFE3P19532 575 aaPredicted RBP5.43□□□□□ -1.54
HMGB1-207ENST00000468384 GABRR2P28476 465 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 GRIK1P39086 918 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 TNFRSF4P43489 277 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 SLC26A2P50443 739 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 ARPP19P56211 112 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 CYP4F8P98187 520 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 BFSP1Q12934 665 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 SPRED3Q2MJR0 410 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 GAB4Q2WGN9 574 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 KIAA0895LQ68EN5 471 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 ZNF517Q6ZMY9 492 aaPredicted RBP5.43□□□□□ -1.54
HMGB1-207ENST00000468384 C16orf47Q6ZP98 133 aaPredicted RBP5.43□□□□□ -1.54
HMGB1-207ENST00000468384 TMC6Q7Z403 805 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 WDR63Q8IWG1 891 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 EFCAB13Q8IY85 973 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 ADGRG2Q8IZP9 1017 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 CMTM8Q8IZV2 173 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 FBXO39Q8N4B4 442 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 OSCP1Q8WVF1 389 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 NKD1Q969G9 470 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 C19orf24Q9BVV8 132 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 PCED1AQ9H1Q7 454 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 ZNF287Q9HBT7 754 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 CYP4F12Q9HCS2 524 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms