RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 HIST1H2AGP0C0S8 130 aaPredicted RBP12.66□□□□□ -0.38
TCOF1-205ENST00000439160 SMPD1P17405 629 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 HIST1H2ADP20671 130 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 C1orf127Q8N9H9 656 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 HIST1H2AHQ96KK5 128 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 HIST1H2AJQ99878 128 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 H2AFJQ9BTM1 129 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 B3GNT5Q9BYG0 378 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 IRAK4Q9NWZ3 460 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 ESRRBO95718 433 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 MMP8P22894 467 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 OR1E1P30953 314 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 DPYSL3Q14195 570 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 ZC3H12AQ5D1E8 599 aaKnown RBP12.66□□□□□ -0.38
TCOF1-205ENST00000439160 DTX3LQ8TDB6 740 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 PWWP2AQ96N64 755 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 FAM167BQ9BTA0 163 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 ENTPD7Q9NQZ7 604 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.66□□□□□ -0.38
TCOF1-205ENST00000439160 IPPQ9Y573 584 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 SMIM28A0A1B0GU29 152 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 B2RBV5 119 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 RAMP2O60895 175 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 ENO3P13929 434 aaPredicted RBP12.66□□□□□ -0.38
TCOF1-205ENST00000439160 HMOX2P30519 316 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 MPP3Q13368 585 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 FAM83EQ2M2I3 478 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 NOL9Q5SY16 702 aaKnown RBP12.66□□□□□ -0.38
TCOF1-205ENST00000439160 LRRC38Q5VT99 294 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 ILDR2Q71H61 639 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.66□□□□□ -0.38
TCOF1-205ENST00000439160 APOL5Q9BWW9 433 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 UNKQ9C0B0 810 aaKnown RBP12.66□□□□□ -0.38
TCOF1-205ENST00000439160 NMRK2Q9NPI5 230 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 CD274Q9NZQ7 290 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 OR12D3Q9UGF7 316 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 PIAS1O75925 651 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 MGAT1P26572 445 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 WEE1P30291 646 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 HNRNPH1P31943 449 aaKnown RBP12.65□□□□□ -0.38
TCOF1-205ENST00000439160 BRCC3P46736 316 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 SP2Q02086 613 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 MRNIPQ6NTE8 343 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 NETO2Q8NC67 525 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 SERPINB11Q96P15 392 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 CPXM1Q96SM3 734 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 MTO1Q9Y2Z2 717 aaKnown RBP12.65□□□□□ -0.38
TCOF1-205ENST00000439160 WDR27A2RRH5 827 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 MAP2K7O14733 419 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 SCAMP3O14828 347 aaKnown RBP12.65□□□□□ -0.38
TCOF1-205ENST00000439160 TSPAN3O60637 253 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 LMNAP02545 664 aaKnown RBP12.65□□□□□ -0.38
TCOF1-205ENST00000439160 CAPRIN1Q14444 709 aaKnown RBP12.65□□□□□ -0.38
TCOF1-205ENST00000439160 HIC1Q14526 733 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 LRRC52Q8N7C0 313 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 TXNRD2Q9NNW7 524 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 CRLS1Q9UJA2 301 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 SMIM35A0A1B0GVV1 85 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 GOLGA8TH3BQL2 631 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 AIM2O14862 343 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 SPTLC1O15269 473 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 TIMM44O43615 452 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 GLRA3O75311 464 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 CABYRO75952 493 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 RAD23BP54727 409 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 EPHB3P54753 998 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 PCBP1Q15365 356 aaKnown RBP eCLIP12.65□□□□□ -0.38
TCOF1-205ENST00000439160 MIPOL1Q8TD10 442 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 TMA16Q96EY4 203 aaKnown RBP12.65□□□□□ -0.38
TCOF1-205ENST00000439160 NTPCRQ9BSD7 190 aaKnown RBP12.65□□□□□ -0.38
TCOF1-205ENST00000439160 THTPAQ9BU02 230 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 CTNNAL1Q9UBT7 734 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 PCYOX1Q9UHG3 505 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 PCDHB8Q9UN66 801 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 COG5Q9UP83 839 aa12.65□□□□□ -0.38
TCOF1-205ENST00000439160 C2orf81A6NN90 581 aa12.65□□□□□ -0.39
TCOF1-205ENST00000439160 LIASO43766 372 aa12.65□□□□□ -0.39
TCOF1-205ENST00000439160 ZBTB48P10074 688 aaPredicted RBP12.65□□□□□ -0.39
TCOF1-205ENST00000439160 NR2C2P49116 596 aa12.65□□□□□ -0.39
TCOF1-205ENST00000439160 MGAT5Q09328 741 aa12.65□□□□□ -0.39
TCOF1-205ENST00000439160 PKN2Q16513 984 aaKnown RBP12.65□□□□□ -0.39
TCOF1-205ENST00000439160 HSP90AA5PQ58FG0 334 aa12.65□□□□□ -0.39
TCOF1-205ENST00000439160 HS6ST3Q8IZP7 471 aa12.65□□□□□ -0.39
TCOF1-205ENST00000439160 PDZD7Q9H5P4 517 aa12.65□□□□□ -0.39
TCOF1-205ENST00000439160 TMEM51Q9NW97 253 aa12.65□□□□□ -0.39
TCOF1-205ENST00000439160 CDY1Q9Y6F8 540 aa12.65□□□□□ -0.39
TCOF1-205ENST00000439160 SUPT7LO94864 414 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 MYL4P12829 197 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 ATXN3P54252 364 aaPredicted RBP12.64□□□□□ -0.39
TCOF1-205ENST00000439160 POLD3Q15054 466 aaPredicted RBP12.64□□□□□ -0.39
TCOF1-205ENST00000439160 C6orf10Q5SRN2 563 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 SDHAF4Q5VUM1 108 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 NUDT18Q6ZVK8 323 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 PTAR1Q7Z6K3 402 aaPredicted RBP12.64□□□□□ -0.39
TCOF1-205ENST00000439160 LRRC15Q8TF66 581 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 EIF2AQ9BY44 585 aaKnown RBP12.64□□□□□ -0.39
TCOF1-205ENST00000439160 CYP4F12Q9HCS2 524 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 ADGRA2Q96PE1 1338 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 TMEM191CA6NGB0 347 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 STMN1P16949 149 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms